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PDF1 protodermal factor 1 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818884, updated on 18-Sep-2024

Summary

Official Symbol
PDF1
Official Full Name
protodermal factor 1
Primary source
TAIR:AT2G42840
Locus tag
AT2G42840
See related
Araport:AT2G42840
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F7D19.16; F7D19_16; protodermal factor 1
Summary
Encodes a putative extracellular proline-rich protein is exclusively expressed in the L1 layer of vegetative, inflorescence and floral meristems and the protoderm of organ primordia.
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Genomic context

See PDF1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (17826071..17827648, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene HVA22-like protein F Neighboring gene K-box region and MADS-box transcription factor family protein Neighboring gene ncRNA Neighboring gene cytochrome P450, family 718 Neighboring gene uncharacterized protein

General gene information

NM_129845.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in extracellular region TAS
Traceable Author Statement
more info
PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
protodermal factor 1
NP_181812.1
  • protodermal factor 1 (PDF1); Has 74620 Blast hits to 36810 proteins in 1713 species: Archae - 153; Bacteria - 12776; Metazoa - 27126; Fungi - 11565; Plants - 10582; Viruses - 2385; Other Eukaryotes - 10033 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    17826071..17827648 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129845.4NP_181812.1  protodermal factor 1 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181812.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9S728
    UniProtKB/TrEMBL
    A0A178VWJ7, A0A5S9X6H3, A0A7G2EGG9