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AT2G25870 haloacid dehalogenase-like hydrolase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817128, updated on 22-Feb-2019

Summary

Gene symbol
AT2G25870
Gene description
haloacid dehalogenase-like hydrolase family protein
Primary source
Araport:AT2G25870
Locus tag
AT2G25870
Gene type
protein coding
RNA name
haloacid dehalogenase-like hydrolase family protein
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT2G25860; F17H15.10; F17H15_10

Genomic context

See AT2G25870 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Sequence:
Chromosome: 2; NC_003071.7 (11030970..11034580)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene YebC-like protein Neighboring gene Nucleotidylyl transferase superfamily protein Neighboring gene poly(A) polymerase 2 Neighboring gene ataurora2 Neighboring gene Oleosin family protein Neighboring gene Zinc finger C-x8-C-x5-C-x3-H type family protein

Bibliography

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

General gene information

NM_179741.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
endoribonuclease activity IDA
Inferred from Direct Assay
more info
PubMed 
hydrolase activity ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
chloroplast organization IMP
Inferred from Mutant Phenotype
more info
PubMed 
chloroplast rRNA processing IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
chloroplast IDA
Inferred from Direct Assay
more info
PubMed 
chloroplast IMP
Inferred from Mutant Phenotype
more info
PubMed 

General protein information

Preferred Names
haloacid dehalogenase-like hydrolase family protein
NP_850072.1
  • haloacid dehalogenase-like hydrolase family protein; FUNCTIONS IN: metallopeptidase activity, hydrolase activity, catalytic activity, zinc ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0054, conserved site (InterPro:IPR020549), Cof protein (InterPro:IPR000150), HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), HAD superfamily hydrolase-like, type 3 (InterPro:IPR013200), Uncharacterised protein family UPF0054 (InterPro:IPR002036); Has 22843 Blast hits to 22827 proteins in 2747 species: Archae - 229; Bacteria - 20428; Metazoa - 41; Fungi - 14; Plants - 67; Viruses - 0; Other Eukaryotes - 2064 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11030970..11034580
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_179741.2NP_850072.1  haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850072.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8L5Z4
    UniProtKB/TrEMBL
    A0A178VS39
    Conserved Domains (1) summary
    PLN02887
    Location:1584
    PLN02887; hydrolase family protein
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