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NOP10 nucleolar RNA-binding Nop10p family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816569, updated on 5-Aug-2022

Summary

Gene symbol
NOP10
Gene description
nucleolar RNA-binding Nop10p family protein
Primary source
Araport:AT2G20490
Locus tag
AT2G20490
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
EDA27; EMBRYO SAC DEVELOPMENT ARREST 27; T13C7.8; T13C7_8
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Genomic context

See NOP10 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (8831681..8832929)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Neighboring gene hypothetical protein Neighboring gene Serine/Threonine-kinase Neighboring gene ncRNA Neighboring gene hypothetical protein Neighboring gene translocase inner membrane subunit 44-1

General gene information

NM_001036302.1
NM_001335686.1
NM_127608.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables snoRNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within polar nucleus fusion IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in Cajal body IDA
Inferred from Direct Assay
more info
PubMed 
located_in mitochondrion HDA PubMed 
located_in nucleolus HDA PubMed 
located_in nucleolus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
nucleolar RNA-binding Nop10p family protein
NP_001031379.1
  • NOP10; FUNCTIONS IN: RNA binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: nucleolus, Cajal body; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nop10 (InterPro:IPR007264); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_565472.1
  • NOP10; FUNCTIONS IN: RNA binding; INVOLVED IN: polar nucleus fusion; LOCATED IN: nucleolus, Cajal body; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: H/ACA ribonucleoprotein complex, subunit Nop10 (InterPro:IPR007264); Has 388 Blast hits to 388 proteins in 192 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 120; Plants - 61; Viruses - 0; Other Eukaryotes - 74 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8831681..8832929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127608.4NP_565472.1  nucleolar RNA-binding Nop10p family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565472.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93XX8, Q9SIM0
    UniProtKB/TrEMBL
    A0A178VV45
    Conserved Domains (1) summary
    pfam04135
    Location:652
    Nop10p; Nucleolar RNA-binding protein, Nop10p family
  2. NM_001335686.1NP_001325224.1  nucleolar RNA-binding Nop10p family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q93XX8, Q9SIM0
    UniProtKB/TrEMBL
    A0A178VV45
    Conserved Domains (1) summary
    pfam04135
    Location:652
    Nop10p; Nucleolar RNA-binding protein, Nop10p family
  3. NM_001036302.1NP_001031379.1  nucleolar RNA-binding Nop10p family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031379.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IVE5
    Conserved Domains (1) summary
    pfam04135
    Location:651
    Nop10p; Nucleolar RNA-binding protein, Nop10p family