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ARF17 auxin response factor 17 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 844120, updated on 18-Sep-2024
Official Symbol
ARF17
Official Full Name
auxin response factor 17
Primary source
TAIR:AT1G77850
Locus tag
AT1G77850
See related
Araport:AT1G77850
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
auxin response factor 17; F28K19.6; F28K19_6
Summary
Posttranscriptionally regulated by miR160 and is essential for proper development.Regulates early auxin response genes.
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See ARF17 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Sequence:
Chromosome: 1; NC_003070.9 (29272074..29275507)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene RING/U-box superfamily protein Neighboring gene Translation initiation factor IF2/IF5 Neighboring gene BPS1-like protein Neighboring gene ncRNA Neighboring gene Rhomboid-related intramembrane serine protease family protein

Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Related articles in PubMed

  1. Fine regulation of ARF17 for anther development and pollen formation. Wang B, et al. BMC Plant Biol, 2017 Dec 19. PMID 29258431, Free PMC Article
  2. AUXIN RESPONSE FACTOR17 is essential for pollen wall pattern formation in Arabidopsis. Yang J, et al. Plant Physiol, 2013 Jun. PMID 23580594, Free PMC Article
  3. AUXIN RESPONSE FACTOR17 Directly Regulates MYB108 for Anther Dehiscence. Xu XF, et al. Plant Physiol, 2019 Oct. PMID 31345954, Free PMC Article
  4. Auxin and light control of adventitious rooting in Arabidopsis require ARGONAUTE1. Sorin C, et al. Plant Cell, 2005 May. PMID 15829601, Free PMC Article
  5. MicroRNA-directed regulation of Arabidopsis AUXIN RESPONSE FACTOR17 is essential for proper development and modulates expression of early auxin response genes. Mallory AC, et al. Plant Cell, 2005 May. PMID 15829600, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. AUXIN RESPONSE FACTOR17 Directly Regulates MYB108 for Anther Dehiscence.
    Title: AUXIN RESPONSE FACTOR17 Directly Regulates MYB108 for Anther Dehiscence.
  2. This work shows that ARF17 plays an essential role in anther development and pollen formation, and ARF17 expression under miR160 regulation is critical for its function during anther development.
    Title: Fine regulation of ARF17 for anther development and pollen formation.
  3. ARF17 is essential for pollen wall patterning in Arabidopsis by modulating primexine formation at least partially through direct regulation of CalS5 gene expression.
    Title: AUXIN RESPONSE FACTOR17 is essential for pollen wall pattern formation in Arabidopsis.
  4. Phenotypic plasticity of adventitious rooting is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance. ARF17, a target of miR160, is a negative regulator.
    Title: Phenotypic plasticity of adventitious rooting in Arabidopsis is controlled by complex regulation of AUXIN RESPONSE FACTOR transcripts and microRNA abundance.
Submit: New GeneRIF Correction
Products Interactant Other Gene Complex Source Pubs Description
NM_001334800.1
NM_106434.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables cis-regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables double-stranded DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within adventitious root development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within anatomical structure morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within auxin-activated signaling pathway TAS
Traceable Author Statement
more info
 PubMed 
acts_upstream_of_or_within callose deposition in cell wall IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pollen development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pollen wall assembly IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within positive regulation of anther dehiscence IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
Preferred Names
auxin response factor 17
NP_565161.1
  • auxin response factor 17 (ARF17); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: anatomical structure morphogenesis, auxin mediated signaling pathway, adventitious root development, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Auxin response factor (InterPro:IPR010525); BEST Arabidopsis thaliana protein match is: auxin response factor 16 (TAIR:AT4G30080.1); Has 1238 Blast hits to 1221 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 1226; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    29272074..29275507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_106434.2 → NP_565161.1  auxin response factor 17 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565161.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    B2CTG7, B2CTG8, B2CTH0, Q84WU6, Q93ZY5, Q9CA12, Q9SH16
    UniProtKB/TrEMBL
    A0A178WR63
    Conserved Domains (2) summary
    pfam02362
    Location:119 → 219
    B3; B3 DNA binding domain
    pfam06507
    Location:274 → 356
    Auxin_resp; Auxin response factor

  2. NM_001334800.1 → NP_001322496.1  auxin response factor 17 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WP26, A0A1P8AU56
    Conserved Domains (2) summary
    pfam02362
    Location:119 → 219
    B3; B3 DNA binding domain
    pfam06507
    Location:274 → 356
    Auxin_resp; Auxin response factor
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q84WU6.1

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