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HTR12 Histone superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 839104, updated on 7-Sep-2023

Summary

Gene symbol
HTR12
Gene description
Histone superfamily protein
Primary source
Araport:AT1G01370
Locus tag
AT1G01370
See related
TAIR:AT1G01370
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CENH3; CENTROMERIC HISTONE H3; F6F3.17; F6F3_17
Summary
Encodes a centromere-identifying protein histone H3 variant. Localized at centromeres in both mitotic and meiotic cells.
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Genomic context

See HTR12 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Sequence:
Chromosome: 1; NC_003070.9 (143489..146479)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Putative endonuclease or glycosyl hydrolase Neighboring gene regulatory component of ABA receptor 1 Neighboring gene Homeodomain-like superfamily protein Neighboring gene UDP-Glycosyltransferase superfamily protein Neighboring gene uncharacterized protein

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_001035850.3
NM_001331270.1
NM_100019.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of chromatin IDA
Inferred from Direct Assay
more info
PubMed 
located_in chromosome, centromeric region IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
Histone superfamily protein
NP_001030927.1
  • HTR12; FUNCTIONS IN: DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: male-gamete-specific histone H3 (TAIR:AT1G19890.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_563627.1
  • HTR12; FUNCTIONS IN: DNA binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: chromosome, centromeric region, nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Histone H3 (InterPro:IPR000164), Histone-fold (InterPro:IPR009072), Histone core (InterPro:IPR007125); BEST Arabidopsis thaliana protein match is: male-gamete-specific histone H3 (TAIR:AT1G19890.1); Has 14361 Blast hits to 14354 proteins in 7190 species: Archae - 0; Bacteria - 0; Metazoa - 10494; Fungi - 2020; Plants - 1256; Viruses - 0; Other Eukaryotes - 591 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    143489..146479
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001331269.1NP_001322867.1  Histone superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LCW8, Q8RVQ9, Q9LNI6
    UniProtKB/TrEMBL
    A0A178WB57, A0A5S9S2J6
    Conserved Domains (1) summary
    cl23735
    Location:72173
    H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
  2. NM_001035850.3NP_001030927.1  Histone superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001030927.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LCW8, Q8RVQ9, Q9LNI6
    UniProtKB/TrEMBL
    A0A178WB57, A0A5S9S2J6
    Conserved Domains (1) summary
    cl23735
    Location:72173
    H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
  3. NM_100019.2NP_563627.1  Histone superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_563627.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LCW8, Q8RVQ9, Q9LNI6
    UniProtKB/TrEMBL
    A0A178WB57, A0A5S9S2J6
    Conserved Domains (1) summary
    cl23735
    Location:72173
    H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...
  4. NM_001331270.1NP_001322868.1  Histone superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8LCW8, Q8RVQ9, Q9LNI6
    UniProtKB/TrEMBL
    A0A178WB57, A0A5S9S2J6
    Conserved Domains (1) summary
    cl23735
    Location:72173
    H4; Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in ...