Format

Send to:

Choose Destination
    • Showing Current items.

    clock.L clock circadian regulator L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 399157, updated on 8-Apr-2017

    Summary

    Official Symbol
    clock.L
    Official Full Name
    clock circadian regulator L homeolog
    Primary source
    Xenbase:XB-GENE-6254406
    Locus tag
    XELAEV_18005292mg
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    clk; Xclk; clock; XClock
    Annotation information
    Annotation category: partial on reference assembly

    Genomic context

    See clock.L in Genome Data Viewer
    Location:
    chromosome: 1L
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    100 current Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (32923098..32978755, complement)

    Chromosome 1L - NC_030724.1Genomic Context describing neighboring genes Neighboring gene steroid 5 alpha-reductase 3 L homeolog Neighboring gene transmembrane protein 165 L homeolog Neighboring gene neuromedin-U-like Neighboring gene uncharacterized LOC108698484

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_030724.1 Chromosome 1L Reference Xenopus_laevis_v2 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Herpes simplex infection, organism-specific biosystem (from KEGG)
      Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • Herpes simplex infection, conserved biosystem (from KEGG)
      Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

    General protein information

    Preferred Names
    clock circadian regulator L homeolog
    Names
    circadian rhythmicity protein CLOCK
    clock homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001090385.2NP_001083854.2  clock circadian regulator L homeolog

      See identical proteins and their annotated locations for NP_001083854.2

      Status: PROVISIONAL

      Source sequence(s)
      AF227985
      UniProtKB/TrEMBL
      Q9I9Q6
      Conserved Domains (4) summary
      cd00083
      Location:2377
      HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
      cd00130
      Location:266364
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam13426
      Location:110211
      PAS_9; PAS domain
      pfam14598
      Location:265368
      PAS_11; PAS domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v2 Primary Assembly

    Genomic

    1. NC_030724.1 Reference Xenopus_laevis_v2 Primary Assembly

      Range
      32923098..32978755 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center