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    IGK immunoglobulin kappa locus [ Homo sapiens (human) ]

    Gene ID: 50802, updated on 13-Feb-2019

    Summary

    Official Symbol
    IGKprovided by HGNC
    Official Full Name
    immunoglobulin kappa locusprovided by HGNC
    Primary source
    HGNC:HGNC:5715
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    IGK@

    Genomic context

    See IGK in Genome Data Viewer
    Location:
    2p11.2
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 2 NC_000002.12 (88857361..90235368)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (89890568..90274235) , (89156874..89630436, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374854 Neighboring gene MIR4436A-IGK intergenic CAGE-defined B cell enhancer Neighboring gene immunoglobulin kappa deleting element or like Neighboring gene immunoglobulin kappa variable 4-1 Neighboring gene immunoglobulin kappa variable 5-2 Neighboring gene immunoglobulin kappa joining 5 Neighboring gene immunoglobulin kappa joining 4 Neighboring gene immunoglobulin kappa joining 3 Neighboring gene immunoglobulin kappa joining 2 Neighboring gene immunoglobulin kappa joining 1 Neighboring gene immunoglobulin kappa variable 7-3 (pseudogene) Neighboring gene immunoglobulin kappa constant Neighboring gene piggyBac transposable element derived 4 pseudogene 5 Neighboring gene immunoglobulin kappa variable 2-4 (pseudogene) Neighboring gene immunoglobulin kappa variable 1-5 Neighboring gene immunoglobulin kappa variable 1-6 Neighboring gene immunoglobulin kappa variable 3-7 (non-functional) Neighboring gene immunoglobulin kappa variable 1-8 Neighboring gene immunoglobulin kappa variable 2-10 (pseudogene) Neighboring gene immunoglobulin kappa variable 1-9 Neighboring gene immunoglobulin kappa variable 3-11 Neighboring gene immunoglobulin kappa variable 1-12 Neighboring gene immunoglobulin kappa variable 1-13 (gene/pseudogene) Neighboring gene immunoglobulin kappa variable 2-14 (pseudogene) Neighboring gene immunoglobulin kappa variable 3-15 Neighboring gene immunoglobulin kappa variable 1-16 Neighboring gene immunoglobulin kappa variable 1-17 Neighboring gene immunoglobulin kappa variable 2-18 (pseudogene) Neighboring gene immunoglobulin kappa variable 2-19 (pseudogene) Neighboring gene immunoglobulin kappa variable 3-20 Neighboring gene uncharacterized LOC107985910 Neighboring gene immunoglobulin kappa variable 6-21 (non-functional) Neighboring gene immunoglobulin kappa variable 1-22 (pseudogene) Neighboring gene immunoglobulin kappa variable 2-23 (pseudogene) Neighboring gene immunoglobulin kappa variable 2-24 Neighboring gene immunoglobulin kappa variable 3-25 (pseudogene) Neighboring gene immunoglobulin kappa variable 2-26 (pseudogene) Neighboring gene immunoglobulin kappa variable 1-27 Neighboring gene immunoglobulin kappa variable 2-28 Neighboring gene immunoglobulin kappa variable 2-29 (gene/pseudogene) Neighboring gene immunoglobulin kappa variable 2-30 Neighboring gene immunoglobulin kappa variable 3-31 (pseudogene) Neighboring gene immunoglobulin kappa variable 1-32 (pseudogene) Neighboring gene immunoglobulin kappa variable 1-33 Neighboring gene immunoglobulin kappa variable 3-34 (pseudogene) Neighboring gene immunoglobulin kappa variable 1-35 (pseudogene) Neighboring gene immunoglobulin kappa variable 2-36 (pseudogene) Neighboring gene immunoglobulin kappa variable 1-37 (non-functional) Neighboring gene immunoglobulin kappa variable 2-38 (pseudogene) Neighboring gene immunoglobulin kappa variable 1-39 (gene/pseudogene) Neighboring gene immunoglobulin kappa variable 2-40 Neighboring gene otopetrin-1-like Neighboring gene lymphocyte specific protein 1 pseudogene Neighboring gene lysine methyltransferase 2C pseudogene Neighboring gene uncharacterized LOC105374862 Neighboring gene ATP binding cassette subfamily D member 1 pseudogene 1 Neighboring gene immunoglobulin kappa variable 2D-40 Neighboring gene immunoglobulin kappa variable 1D-39 Neighboring gene immunoglobulin kappa variable 2D-38 (pseudogene) Neighboring gene immunoglobulin kappa variable 1D-37 (non-functional) Neighboring gene immunoglobulin kappa variable 2D-36 (pseudogene) Neighboring gene immunoglobulin kappa variable 1D-35 (pseudogene) Neighboring gene immunoglobulin kappa variable 3D-34 (pseudogene) Neighboring gene immunoglobulin kappa variable 1D-33 Neighboring gene immunoglobulin kappa variable 1D-32 (pseudogene) Neighboring gene immunoglobulin kappa variable 3D-31 (pseudogene) Neighboring gene immunoglobulin kappa variable 2D-30 Neighboring gene immunoglobulin kappa variable 2D-29 Neighboring gene immunoglobulin kappa variable 2D-28 Neighboring gene immunoglobulin kappa variable 1D-27 (pseudogene) Neighboring gene immunoglobulin kappa variable 2D-26 Neighboring gene immunoglobulin kappa variable 3D-25 (pseudogene) Neighboring gene immunoglobulin kappa variable 2D-24 (non-functional) Neighboring gene immunoglobulin kappa variable 2D-23 (pseudogene) Neighboring gene immunoglobulin kappa variable 1D-22 (pseudogene) Neighboring gene immunoglobulin kappa variable 6D-21 (non-functional) Neighboring gene immunoglobulin kappa variable 3D-20 Neighboring gene immunoglobulin kappa variable 2D-19 (pseudogene) Neighboring gene immunoglobulin kappa variable 2D-18 (pseudogene) Neighboring gene immunoglobulin kappa variable 6D-41 (non-functional) Neighboring gene immunoglobulin kappa variable 1D-17 Neighboring gene immunoglobulin kappa variable 1D-16 Neighboring gene immunoglobulin kappa variable 3D-15 (gene/pseudogene) Neighboring gene immunoglobulin kappa variable 2D-14 (pseudogene) Neighboring gene immunoglobulin kappa variable 1D-13 Neighboring gene immunoglobulin kappa variable 1D-12 Neighboring gene immunoglobulin kappa variable 3D-11 Neighboring gene immunoglobulin kappa variable 2D-10 (pseudogene) Neighboring gene immunoglobulin kappa variable 1D-42 (non-functional) Neighboring gene immunoglobulin kappa variable 1D-43 Neighboring gene uncharacterized LOC101926946 Neighboring gene immunoglobulin kappa variable 1/OR2-118 (pseudogene) Neighboring gene immunoglobulin kappa variable 1D-8 Neighboring gene immunoglobulin kappa variable 3D-7

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Clone Names

    • FLJ26296, MGC22645, MGC27376, MGC40426, MGC71990

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_000834.1 

      Range
      10779..484339
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    2. NG_000833.2 

      Range
      13431..397098 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p12 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p12 Primary Assembly

      Range
      88857361..90235368
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p12 PATCHES

    Genomic

    1. NW_012132915.1 Reference GRCh38.p12 PATCHES

      Range
      1..439675 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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