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    Agps alkylglycerone phosphate synthase [ Rattus norvegicus (Norway rat) ]

    Gene ID: 84114, updated on 12-Aug-2018

    Summary

    Symbol
    Agpsprovided by RGD
    Full Name
    alkylglycerone phosphate synthaseprovided by RGD
    Primary source
    RGD:620364
    See related
    Ensembl:ENSRNOG00000001547
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ads; Adps; Adap-s
    Annotation information
    Annotation category: partial on reference assembly
    Expression
    Biased expression in Thymus (RPKM 373.9), Lung (RPKM 257.6) and 9 other tissues See more
    Orthologs

    Genomic context

    See Agps in Genome Data Viewer
    Location:
    3q23
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (62648352..62749250)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 3 NC_005102.3 (69193349..69296169)

    Chromosome 3 - NC_005102.4Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L10-like Neighboring gene uncharacterized LOC103691825 Neighboring gene tetratricopeptide repeat domain 30B Neighboring gene tetratricopeptide repeat domain 30A1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    FAD binding IEA
    Inferred from Electronic Annotation
    more info
     
    FAD binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    alkylglycerone-phosphate synthase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    alkylglycerone-phosphate synthase activity IEA
    Inferred from Electronic Annotation
    more info
     
    alkylglycerone-phosphate synthase activity ISO
    Inferred from Sequence Orthology
    more info
     
    oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    ether lipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    ether lipid biosynthetic process ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    lipid biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    oxidation-reduction process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    mitochondrion IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleolus IEA
    Inferred from Electronic Annotation
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    peroxisome IDA
    Inferred from Direct Assay
    more info
    PubMed 
    peroxisome IEA
    Inferred from Electronic Annotation
    more info
     
    peroxisome ISO
    Inferred from Sequence Orthology
    more info
     
    peroxisome TAS
    Traceable Author Statement
    more info
    PubMed 

    General protein information

    Preferred Names
    alkyldihydroxyacetonephosphate synthase, peroxisomal
    Names
    alkyl-DHAP synthase
    alkyl-dihydroxyacetonephosphate synthase
    alkyldihydroxyacetone phosphate synthase
    alkylglycerone phosphate synthase-like
    NP_445802.2

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_053350.2NP_445802.2  alkyldihydroxyacetonephosphate synthase, peroxisomal

      Status: VALIDATED

      Source sequence(s)
      AF121052, BF524961, BM389725
      UniProtKB/Swiss-Prot
      Q9EQR2
      Related
      ENSRNOP00000002111.5, ENSRNOT00000002111.5
      Conserved Domains (3) summary
      COG0277
      Location:212664
      GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
      pfam01565
      Location:218361
      FAD_binding_4; FAD binding domain
      pfam02913
      Location:396669
      FAD-oxidase_C; FAD linked oxidases, C-terminal domain

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005102.4 Reference Rnor_6.0 Primary Assembly

      Range
      62648352..62749250
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000071.1 Alternate Rn_Celera

      Range
      60248210..60345456
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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