Format

Send to:

Choose Destination
    • Showing Current items.

    LHX1 LIM homeobox 1 [ Bos taurus (cattle) ]

    Gene ID: 786041, updated on 14-Jan-2019

    Summary

    Official Symbol
    LHX1provided by VGNC
    Official Full Name
    LIM homeobox 1provided by VGNC
    Primary source
    VGNC:VGNC:30871
    See related
    BGD:BT22639; Ensembl:ENSBTAG00000033562
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See LHX1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 19 NC_037346.1 (13300723..13306530)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 19 AC_000176.1 (13611604..13617412)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112442605 Neighboring gene 60S ribosomal protein L4 pseudogene Neighboring gene apoptosis antagonizing transcription factor Neighboring gene acetyl-CoA carboxylase alpha Neighboring gene U6atac minor spliceosomal RNA

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • Neural Crest Differentiation, organism-specific biosystem (from WikiPathways)
      Neural Crest Differentiation, organism-specific biosystemGene regulatory network model of cranial neural crest cell (CNCC) development, adaped from PMID: 19575671. Most interactions in the model are proposed to regulate transcription of core factors involv...

    General gene information

    Markers

    Homology

    Clone Names

    • MGC179423

    General protein information

    Preferred Names
    LIM/homeobox protein Lhx1
    Names
    LIM homeobox protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105447.1NP_001098917.1  LIM/homeobox protein Lhx1

      See identical proteins and their annotated locations for NP_001098917.1

      Status: PROVISIONAL

      Source sequence(s)
      BC153212
      UniProtKB/TrEMBL
      A7Z015
      Related
      ENSBTAP00000044870.2, ENSBTAT00000047689.3
      Conserved Domains (4) summary
      cd09367
      Location:455
      LIM1_Lhx1_Lhx5; The first LIM domain of Lhx1 (also known as Lim1) and Lhx5
      cd09375
      Location:63118
      LIM2_Lhx1_Lhx5; The second LIM domain of Lhx1 (also known as Lim1) and Lhx5
      cl14561
      Location:291382
      An_peroxidase_like; Animal heme peroxidases and related proteins
      pfam00046
      Location:183236
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      13300723..13306530
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Support Center