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    tgfb1i1.L transforming growth factor beta 1 induced transcript 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 779337, updated on 5-Aug-2018

    Summary

    Official Symbol
    tgfb1i1.L
    Official Full Name
    transforming growth factor beta 1 induced transcript 1 L homeolog
    Primary source
    Xenbase:XB-GENE-866238
    Locus tag
    XELAEV_18045620mg
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    hic5; ara55; hic-5; tsc-5; ara-55; tgfb1i1
    Annotation information
    Annotation category: partial on reference assembly

    Genomic context

    See tgfb1i1.L in Genome Data Viewer
    Location:
    chromosome: 9_10L
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    100 current Xenopus_laevis_v2 (GCF_001663975.1) 9_10L NC_030740.1 (113614400..113631040, complement)

    Chromosome 9_10L - NC_030740.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 70 L homeolog Neighboring gene uncharacterized LOC108701708 Neighboring gene armadillo repeat containing 5 L homeolog Neighboring gene carbonic anhydrase 4-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_030740.1 Chromosome 9_10L Reference Xenopus_laevis_v2 Primary Assembly

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Focal adhesion, organism-specific biosystem (from KEGG)
      Focal adhesion, organism-specific biosystemCell-matrix adhesions play essential roles in important biological processes including cell motility, cell proliferation, cell differentiation, regulation of gene expression and cell survival. At the...
    • Focal adhesion, conserved biosystem (from KEGG)
      Focal adhesion, conserved biosystemCell-matrix adhesions play essential roles in important biological processes including cell motility, cell proliferation, cell differentiation, regulation of gene expression and cell survival. At the...
    • Regulation of actin cytoskeleton, organism-specific biosystem (from KEGG)
      Regulation of actin cytoskeleton, organism-specific biosystem
      Regulation of actin cytoskeleton
    • Regulation of actin cytoskeleton, conserved biosystem (from KEGG)
      Regulation of actin cytoskeleton, conserved biosystem
      Regulation of actin cytoskeleton
    • VEGF signaling pathway, organism-specific biosystem (from KEGG)
      VEGF signaling pathway, organism-specific biosystemThere is now much evidence that VEGFR-2 is the major mediator of VEGF-driven responses in endothelial cells and it is considered to be a crucial signal transducer in both physiologic and pathologic a...
    • VEGF signaling pathway, conserved biosystem (from KEGG)
      VEGF signaling pathway, conserved biosystemThere is now much evidence that VEGFR-2 is the major mediator of VEGF-driven responses in endothelial cells and it is considered to be a crucial signal transducer in both physiologic and pathologic a...

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    transforming growth factor beta-1-induced transcript 1 protein
    Names
    androgen receptor activator of 55 kDa
    androgen receptor coactivator ARA55
    hydrogen peroxide-inducible clone 5 protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001096956.1NP_001090425.2  transforming growth factor beta-1-induced transcript 1 protein

      Status: PROVISIONAL

      Source sequence(s)
      BC125983
      UniProtKB/Swiss-Prot
      Q2TCH4
      Conserved Domains (5) summary
      cd09338
      Location:391443
      LIM3_Paxillin_like; The third LIM domain of the paxillin like protein family
      cd09339
      Location:450501
      LIM4_Paxillin_like; The fourth LIM domain of the Paxillin-like protein family
      cd09336
      Location:273325
      LIM1_Paxillin_like; The first LIM domain of the paxillin like protein family
      pfam03535
      Location:63120
      Paxillin; Paxillin family
      cl02475
      Location:332383
      LIM; LIM is a small protein-protein interaction domain, containing two zinc fingers

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v2 Primary Assembly

    Genomic

    1. NC_030740.1 Reference Xenopus_laevis_v2 Primary Assembly

      Range
      113614400..113631040 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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