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    SRSF1 serine and arginine rich splicing factor 1 [ Gallus gallus (chicken) ]

    Gene ID: 772264, updated on 22-Feb-2019

    Summary

    Symbol
    SRSF1provided by CGNC
    Full Name
    serine and arginine rich splicing factor 1provided by CGNC
    Primary source
    CGNC:4116
    See related
    Ensembl:ENSGALG00000005525
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    SFRS1
    Orthologs

    Genomic context

    See SRSF1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 19 NC_006106.5 (8854422..8858055)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 19 NC_006106.4 (8728501..8732117)
    102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 19 NC_006106.3 (8706819..8710485)

    Chromosome 19 - NC_006106.5Genomic Context describing neighboring genes Neighboring gene microRNA mir-6639 Neighboring gene dynein light chain LC8-type 2 Neighboring gene vascular endothelial zinc finger 1 Neighboring gene uncharacterized LOC112530065 Neighboring gene CUE domain containing 1

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Herpes simplex infection, organism-specific biosystem (from KEGG)
      Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • Herpes simplex infection, conserved biosystem (from KEGG)
      Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • Spliceosome, organism-specific biosystem (from KEGG)
      Spliceosome, organism-specific biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
    • Spliceosome, conserved biosystem (from KEGG)
      Spliceosome, conserved biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
    • mRNA processing, organism-specific biosystem (from WikiPathways)
      mRNA processing, organism-specific biosystemThis process describes the conversion of precursor messenger RNA into mature messenger RNA (mRNA). The pre-mRNA molecule undergoes three main modifications. These modifications are 5' capping, 3' pol...

    General gene information

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    mRNA cis splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of alternative mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear speck IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    serine/arginine-rich splicing factor 1
    Names
    splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001113741.1NP_001107213.1  serine/arginine-rich splicing factor 1

      See identical proteins and their annotated locations for NP_001107213.1

      Status: VALIDATED

      Source sequence(s)
      AJ719371, BU143051, CR386959
      UniProtKB/Swiss-Prot
      Q5ZML3
      UniProtKB/TrEMBL
      F1NQW8
      Related
      ENSGALP00000038262.2, ENSGALT00000039052.4
      Conserved Domains (2) summary
      cd12597
      Location:1790
      RRM1_SRSF1; RNA recognition motif 1 in serine/arginine-rich splicing factor 1 (SRSF1) and similar proteins
      cd12601
      Location:121193
      RRM2_SRSF1_like; RNA recognition motif 2 in serine/arginine-rich splicing factor SRSF1, SRSF9 and similar proteins

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006106.5 Reference GRCg6a Primary Assembly

      Range
      8854422..8858055
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003071206.1 RNA Sequence

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