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    EFNA1 ephrin A1 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 740136, updated on 20-Apr-2019

    Summary

    Official Symbol
    EFNA1provided by VGNC
    Official Full Name
    ephrin A1provided by VGNC
    Primary source
    VGNC:VGNC:9853
    Locus tag
    CK820_G0045170
    See related
    Ensembl:ENSPTRG00000001407
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs

    Genomic context

    See EFNA1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    105 current Clint_PTRv2 (GCF_002880755.1) 1 NC_036879.1 (129929944..129937334)
    104 previous assembly Pan_tro 3.0 (GCF_000001515.7) 1 NC_006468.4 (133215232..133222622)
    103 previous assembly Pan_troglodytes-2.1.4 (GCF_000001515.6) 1 NC_006468.3 (133383940..133391333)

    Chromosome 1 - NC_036879.1Genomic Context describing neighboring genes Neighboring gene ephrin A4 Neighboring gene ephrin A3 Neighboring gene solute carrier family 50 member 1 Neighboring gene dolichyl-phosphate mannosyltransferase subunit 3

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Axon guidance, organism-specific biosystem (from KEGG)
      Axon guidance, organism-specific biosystemAxon guidance represents a key stage in the formation of neuronal network. Axons are guided by a variety of guidance factors, such as netrins, ephrins, Slits, and semaphorins. These guidance cues are...
    • Axon guidance, conserved biosystem (from KEGG)
      Axon guidance, conserved biosystemAxon guidance represents a key stage in the formation of neuronal network. Axons are guided by a variety of guidance factors, such as netrins, ephrins, Slits, and semaphorins. These guidance cues are...
    • PI3K-Akt signaling pathway, organism-specific biosystem (from KEGG)
      PI3K-Akt signaling pathway, organism-specific biosystemThe phosphatidylinositol 3' -kinase(PI3K)-Akt signaling pathway is activated by many types of cellular stimuli or toxic insults and regulates fundamental cellular functions such as transcription, tra...
    • PI3K-Akt signaling pathway, conserved biosystem (from KEGG)
      PI3K-Akt signaling pathway, conserved biosystemThe phosphatidylinositol 3' -kinase(PI3K)-Akt signaling pathway is activated by many types of cellular stimuli or toxic insults and regulates fundamental cellular functions such as transcription, tra...
    • Rap1 signaling pathway, organism-specific biosystem (from KEGG)
      Rap1 signaling pathway, organism-specific biosystemRap1 is a small GTPase that controls diverse processes, such as cell adhesion, cell-cell junction formation and cell polarity. Like all G proteins, Rap1 cycles between an inactive GDP-bound and an ac...
    • Rap1 signaling pathway, conserved biosystem (from KEGG)
      Rap1 signaling pathway, conserved biosystemRap1 is a small GTPase that controls diverse processes, such as cell adhesion, cell-cell junction formation and cell polarity. Like all G proteins, Rap1 cycles between an inactive GDP-bound and an ac...
    • Ras signaling pathway, organism-specific biosystem (from KEGG)
      Ras signaling pathway, organism-specific biosystemThe Ras proteins are GTPases that function as molecular switches for signaling pathways regulating cell proliferation, survival, growth, migration, differentiation or cytoskeletal dynamism. Ras prote...

    General gene information

    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Pan troglodytes Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Clint_PTRv2 Primary Assembly

    Genomic

    1. NC_036879.1 Reference Clint_PTRv2 Primary Assembly

      Range
      129929944..129937334
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001141980.3XP_001141980.2  ephrin-A1 isoform X1

      See identical proteins and their annotated locations for XP_001141980.2

      UniProtKB/TrEMBL
      H2Q067
      Related
      ENSPTRP00000002368.5, ENSPTRT00000002576.6
      Conserved Domains (1) summary
      cd10425
      Location:19148
      Ephrin-A_Ectodomain; Ectodomain of Ephrin A
    2. XM_003308425.3XP_003308473.1  ephrin-A1 isoform X2

      See identical proteins and their annotated locations for XP_003308473.1

      Related
      ENSPTRP00000061597.1, ENSPTRT00000105174.1
      Conserved Domains (1) summary
      cd10425
      Location:19142
      Ephrin-A_Ectodomain; Ectodomain of Ephrin A
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