Format

Send to:

Choose Destination
    • Showing Current items.

    Fbxo47 F-box protein 47 [ Mus musculus (house mouse) ]

    Gene ID: 72973, updated on 31-Jan-2019

    Summary

    Official Symbol
    Fbxo47provided by MGI
    Official Full Name
    F-box protein 47provided by MGI
    Primary source
    MGI:MGI:1920223
    See related
    Ensembl:ENSMUSG00000070336
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1562; 2900052P03Rik
    Expression
    Biased expression in testis adult (RPKM 1.7), cortex adult (RPKM 0.2) and 11 other tissues See more
    Orthologs

    Genomic context

    See Fbxo47 in Genome Data Viewer
    Location:
    11; 11 D
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (97851558..97884386, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (97715621..97745468, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene LIM and SH3 protein 1 Neighboring gene RIKEN cDNA B230217C12 gene Neighboring gene plexin domain containing 1 Neighboring gene cytochrome c oxidase subunit 5A, mitochondrial pseudogene Neighboring gene nuclear encoded tRNA cysteine 55 (anticodon GCA)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Homology

    Clone Names

    • MGC118329

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081435.1NP_001074904.1  F-box only protein 47

      See identical proteins and their annotated locations for NP_001074904.1

      Status: PROVISIONAL

      Source sequence(s)
      AL596446
      Consensus CDS
      CCDS36299.1
      UniProtKB/Swiss-Prot
      A2A6H3
      Related
      ENSMUSP00000091471.3, ENSMUST00000093939.3
      Conserved Domains (1) summary
      pfam00646
      Location:4778
      F-box; F-box domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      97851558..97884386 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006534330.3XP_006534393.1  F-box only protein 47 isoform X1

      See identical proteins and their annotated locations for XP_006534393.1

      UniProtKB/Swiss-Prot
      A2A6H3
      Conserved Domains (1) summary
      pfam00646
      Location:4778
      F-box; F-box domain
    2. XM_006534332.2XP_006534395.1  F-box only protein 47 isoform X2

    3. XM_011249279.2XP_011247581.1  F-box only protein 47 isoform X3

      See identical proteins and their annotated locations for XP_011247581.1

    4. XM_006534329.3XP_006534392.1  F-box only protein 47 isoform X1

      See identical proteins and their annotated locations for XP_006534392.1

      UniProtKB/Swiss-Prot
      A2A6H3
      Conserved Domains (1) summary
      pfam00646
      Location:4778
      F-box; F-box domain
    5. XM_006534328.3XP_006534391.1  F-box only protein 47 isoform X1

      See identical proteins and their annotated locations for XP_006534391.1

      UniProtKB/Swiss-Prot
      A2A6H3
      Conserved Domains (1) summary
      pfam00646
      Location:4778
      F-box; F-box domain
    Support Center