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    CAPN10 calpain 10 [ Sus scrofa (pig) ]

    Gene ID: 724069, updated on 2-Dec-2017

    Summary

    Gene symbol
    CAPN10
    Gene description
    calpain 10
    See related
    Ensembl:ENSSSCG00000037779
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 11.9), kidney (RPKM 11.3) and 8 other tissues See more
    Orthologs

    Genomic context

    See CAPN10 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 15 NC_010457.5 (139557643..139568764)

    Chromosome 15 - NC_010457.5Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 28 Neighboring gene arginyl aminopeptidase like 1 Neighboring gene G protein-coupled receptor 35 Neighboring gene aquaporin-12-like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_010457.5 Chromosome 15 Reference Sscrofa11.1 Primary Assembly

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    calpain-10
    NP_001037994.1
    XP_020930374.1
    XP_020930375.1
    XP_020930376.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001044529.1NP_001037994.1  calpain-10

      See identical proteins and their annotated locations for NP_001037994.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ647669
      UniProtKB/TrEMBL
      Q152V0
      Related
      ENSSSCP00000047028.1, ENSSSCT00000061989.1
      Conserved Domains (3) summary
      smart00720
      Location:340491
      calpain_III; calpain_III domain
      cd00044
      Location:5321
      CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
      cd00214
      Location:509648
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010457.5 Reference Sscrofa11.1 Primary Assembly

      Range
      139557643..139568764
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021074716.1XP_020930375.1  calpain-10 isoform X2

      Related
      ENSSSCP00000041663.1, ENSSSCT00000047962.1
      Conserved Domains (3) summary
      cd00044
      Location:58374
      CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
      cd00214
      Location:392546
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
      cl00165
      Location:562660
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    2. XM_021074715.1XP_020930374.1  calpain-10 isoform X1

      Conserved Domains (2) summary
      cd00044
      Location:58374
      CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
      cd00214
      Location:562696
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
    3. XM_021074717.1XP_020930376.1  calpain-10 isoform X3

      Conserved Domains (2) summary
      cd00044
      Location:21301
      CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
      cd00214
      Location:489623
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
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