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    mmp17a matrix metallopeptidase 17a [ Danio rerio (zebrafish) ]

    Gene ID: 570076, updated on 16-Mar-2019

    Summary

    Official Symbol
    mmp17aprovided by ZNC
    Official Full Name
    matrix metallopeptidase 17aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070820-2
    See related
    Ensembl:ENSDARG00000078915
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    mmp17
    Orthologs

    Genomic context

    See mmp17a in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (14890803..15046510, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (14794545..14950298, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 21 NC_007132.5 (13092957..13249196, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103909433 Neighboring gene pseudouridine synthase 1 Neighboring gene unc-51 like autophagy activating kinase 1 Neighboring gene splicing factor SWAP Neighboring gene si:dkey-11o15.4

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    metalloendopeptidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    metalloendopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    metallopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    peptidase activity IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    collagen catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    extracellular matrix organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    proteolysis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    matrix metalloproteinase-17
    Names
    matrix metallopeptidase 17 (membrane-inserted)
    XP_698601.6

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      14890803..15046510 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_693509.9XP_698601.6  matrix metalloproteinase-17

      UniProtKB/TrEMBL
      A0A286YB36
      Related
      ENSDARP00000126006.1, ENSDART00000151200.2
      Conserved Domains (4) summary
      cd00094
      Location:332526
      HX; Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of ...
      cd04278
      Location:128292
      ZnMc_MMP; Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family. MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate ...
      pfam00413
      Location:128292
      Peptidase_M10; Matrixin
      pfam01471
      Location:4999
      PG_binding_1; Putative peptidoglycan binding domain
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