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    snx6 sorting nexin 6 [ Danio rerio (zebrafish) ]

    Gene ID: 567182, updated on 19-Apr-2019

    Summary

    Official Symbol
    snx6provided by ZNC
    Official Full Name
    sorting nexin 6provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050913-152
    See related
    Ensembl:ENSDARG00000058444
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    fa55b10; im:7146294; wu:fa55b10; zgc:110798
    Orthologs

    Genomic context

    See snx6 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (9963431..9995785, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (9807387..9839756, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 17 NC_007128.5 (9828220..9860451, complement)

    Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108179745 Neighboring gene serine palmitoyltransferase, small subunit A Neighboring gene e2f-associated phosphoprotein Neighboring gene cofilin 2 (muscle) Neighboring gene bromodomain adjacent to zinc finger domain, 1A

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • Endocytosis, organism-specific biosystem (from KEGG)
      Endocytosis, organism-specific biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...
    • Endocytosis, conserved biosystem (from KEGG)
      Endocytosis, conserved biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...
    • Transformation Growth Factor (TGF) beta Receptor Signaling Pathway, organism-specific biosystem (from WikiPathways)
      Transformation Growth Factor (TGF) beta Receptor Signaling Pathway, organism-specific biosystem
      Transformation Growth Factor (TGF) beta Receptor Signaling Pathway

    General gene information

    Markers

    Homology

    Clone Names

    • MGC110798

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    retrograde transport, endosome to Golgi IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    endosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030217.2NP_001025388.2  sorting nexin-6

      Status: VALIDATED

      Source sequence(s)
      CU463180
      UniProtKB/TrEMBL
      F8W5C6
      Related
      ENSDARP00000123712.1, ENSDART00000148463.3

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007128.7 Reference GRCz11 Primary Assembly

      Range
      9963431..9995785 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001796213.2 RNA Sequence

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