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    apba1b amyloid beta (A4) precursor protein-binding, family A, member 1b [ Danio rerio (zebrafish) ]

    Gene ID: 565507, updated on 14-Feb-2019

    Summary

    Official Symbol
    apba1bprovided by ZNC
    Official Full Name
    amyloid beta (A4) precursor protein-binding, family A, member 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070925-3
    See related
    Ensembl:ENSDARG00000074328
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    apba1

    Genomic context

    See apba1b in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (15777187..15813279)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (15819100..15855158)
    103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (15805792..15841854)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase pim-2-like Neighboring gene serine/threonine-protein kinase pim-2-like Neighboring gene tight junction protein 2a (zona occludens 2) Neighboring gene phosphatidylinositol-4-phosphate 5-kinase, type I, beta a

    Genomic regions, transcripts, and products

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    amyloid-beta binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    chemical synaptic transmission IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    dendritic spine IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    synapse IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    amyloid beta A4 precursor protein-binding family A member 1
    Names
    amyloid beta (A4) precursor protein-binding, family A, member 1 (X11)

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      15777187..15813279
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005155586.4XP_005155643.1  amyloid beta A4 precursor protein-binding family A member 1 isoform X1

      UniProtKB/TrEMBL
      E7FGL9
      Related
      ENSDARP00000100690.2, ENSDART00000114483.4
      Conserved Domains (3) summary
      cd00992
      Location:879952
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01208
      Location:579757
      PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain
      pfam00595
      Location:790873
      PDZ; PDZ domain (Also known as DHR or GLGF)
    2. XM_688787.9XP_693879.6  amyloid beta A4 precursor protein-binding family A member 1 isoform X2

      UniProtKB/TrEMBL
      E9QDB8
      Related
      ENSDARP00000119815.1, ENSDART00000140511.2
      Conserved Domains (3) summary
      cd00992
      Location:868941
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      cd01208
      Location:579746
      PTB_X11; X11-like Phosphotyrosine-binding (PTB) domain
      pfam00595
      Location:779862
      PDZ; PDZ domain (Also known as DHR or GLGF)
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