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    per1a period circadian clock 1a [ Danio rerio (zebrafish) ]

    Gene ID: 563926, updated on 14-Feb-2019

    Summary

    Official Symbol
    per1aprovided by ZNC
    Official Full Name
    period circadian clock 1aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-011220-1
    See related
    Ensembl:ENSDARG00000056885
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    per1; zC237L4.4; si:ch211-237l4.4

    Genomic context

    See per1a in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (22811619..22831513, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (22841806..22862051, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (23010987..23031711, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene si:ch211-237l4.6 Neighboring gene procollagen C-endopeptidase enhancer a Neighboring gene vesicle-associated membrane protein 2 Neighboring gene transfer RNA leucine (anticodon AAG)

    Genomic regions, transcripts, and products

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Herpes simplex infection, organism-specific biosystem (from KEGG)
      Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • Herpes simplex infection, conserved biosystem (from KEGG)
      Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

    General gene information

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    transcription corepressor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription factor binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    circadian regulation of gene expression IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    entrainment of circadian clock by photoperiod IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    negative regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    photoperiodism IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    response to hydrogen peroxide IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    response to light stimulus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    period 1
    Names
    period homolog 1
    period homolog 1a

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030183.1NP_001025354.1  period 1

      Status: PROVISIONAL

      Source sequence(s)
      AL807389
      Related
      ENSDARP00000073915.5, ENSDART00000079459.5
      Conserved Domains (3) summary
      cd00130
      Location:334435
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam08447
      Location:347431
      PAS_3; PAS fold
      pfam12114
      Location:10081190
      Period_C; Period protein 2/3C-terminal region

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      22811619..22831513 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005172626.4XP_005172683.1  period 1 isoform X3

      Conserved Domains (3) summary
      cd00130
      Location:369470
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam08447
      Location:382466
      PAS_3; PAS fold
      pfam12114
      Location:11601347
      Period_C; Period protein 2/3C-terminal region
    2. XM_021479187.1XP_021334862.1  period 1 isoform X4

      Conserved Domains (3) summary
      pfam08447
      Location:382466
      PAS_3; PAS fold
      pfam12114
      Location:11041288
      Period_C; Period protein 2/3C-terminal region
      cl26464
      Location:6831023
      Atrophin-1; Atrophin-1 family
    3. XM_005172627.4XP_005172684.1  period 1 isoform X2

      Conserved Domains (3) summary
      cd00130
      Location:369470
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam08447
      Location:382466
      PAS_3; PAS fold
      pfam12114
      Location:11601347
      Period_C; Period protein 2/3C-terminal region
    4. XM_005172625.4XP_005172682.1  period 1 isoform X1

      UniProtKB/TrEMBL
      A0A0R4ICG0
      Related
      ENSDARP00000131343.1, ENSDART00000160115.3
      Conserved Domains (3) summary
      cd00130
      Location:369470
      PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
      pfam08447
      Location:382466
      PAS_3; PAS fold
      pfam12114
      Location:11611348
      Period_C; Period protein 2/3C-terminal region
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