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    slc7a1 solute carrier family 7 member 1 [ Danio rerio (zebrafish) ]

    Gene ID: 559627, updated on 7-Apr-2019

    Summary

    Official Symbol
    slc7a1provided by ZNC
    Official Full Name
    solute carrier family 7 member 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091116-69
    See related
    Ensembl:ENSDARG00000016439
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    si:ch211-69k21.2

    Genomic context

    See slc7a1 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (24445664..24494987)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (24476213..24524539)
    103 previous assembly Zv9 (GCF_000002035.4) 10 NC_007121.5 (24876858..24925233)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene hephaestin-like 1b Neighboring gene zgc:158234 Neighboring gene microtubule associated tumor suppressor candidate 2a Neighboring gene solute carrier family 46 member 3 Neighboring gene stomatin (EPB72)-like 3b

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    L-lysine transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    L-ornithine transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    arginine transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    L-arginine import across plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    L-ornithine transmembrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    amino acid transport IEA
    Inferred from Electronic Annotation
    more info
     
    transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    high affinity cationic amino acid transporter 1
    Names
    solute carrier family 7 (cationic amino acid transporter, y+ system), member 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      24445664..24494987
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_678531.7XP_683623.4  high affinity cationic amino acid transporter 1 isoform X1

      Related
      ENSDARP00000152628.1, ENSDART00000183510.1
      Conserved Domains (1) summary
      TIGR00906
      Location:4603
      2A0303; cationic amino acid transport permease
    2. XM_005155277.4XP_005155334.1  high affinity cationic amino acid transporter 1 isoform X2

      UniProtKB/TrEMBL
      E7F0D2
      Related
      ENSDARP00000027285.8, ENSDART00000008248.9
      Conserved Domains (1) summary
      TIGR00906
      Location:4602
      2A0303; cationic amino acid transport permease
    3. XM_021479348.1XP_021335023.1  high affinity cationic amino acid transporter 1 isoform X1

      Conserved Domains (1) summary
      TIGR00906
      Location:4603
      2A0303; cationic amino acid transport permease

    RNA

    1. XR_002459600.1 RNA Sequence

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394785.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      457952..501262
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021472274.1XP_021327949.1  high affinity cationic amino acid transporter 1 isoform X1

      Conserved Domains (1) summary
      TIGR00906
      Location:4603
      2A0303; cationic amino acid transport permease
    2. XM_021472276.1XP_021327951.1  high affinity cationic amino acid transporter 1 isoform X2

      Conserved Domains (1) summary
      TIGR00906
      Location:4602
      2A0303; cationic amino acid transport permease
    3. XM_021472275.1XP_021327950.1  high affinity cationic amino acid transporter 1 isoform X1

      Conserved Domains (1) summary
      TIGR00906
      Location:4603
      2A0303; cationic amino acid transport permease

    RNA

    1. XR_002457266.1 RNA Sequence

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