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    nrl neural retina leucine zipper [ Danio rerio (zebrafish) ]

    Gene ID: 554169, updated on 14-Feb-2019

    Summary

    Official Symbol
    nrlprovided by ZNC
    Official Full Name
    neural retina leucine zipperprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050729-1
    See related
    Ensembl:ENSDARG00000100466
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zgc:136315

    Genomic context

    See nrl in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (661037..673589)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (45694657..45707209, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 20 NC_007131.5 (678993..693026)

    Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene si:dkey-121j17.5 Neighboring gene potassium channel, subfamily K, member 2b Neighboring gene uncharacterized LOC110438173 Neighboring gene SUMO specific peptidase 6a Neighboring gene myosin VIa

    Genomic regions, transcripts, and products

    Bibliography

    General gene information

    Homology

    Clone Names

    • MGC136315

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    RNA polymerase II proximal promoter sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    neural retina-specific leucine zipper protein
    Names
    leucine zipper transcription factor

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001040331.1NP_001035421.1  neural retina-specific leucine zipper protein

      See identical proteins and their annotated locations for NP_001035421.1

      Status: PROVISIONAL

      Source sequence(s)
      BC115080
      UniProtKB/TrEMBL
      Q1RM92
      Related
      ENSDARP00000139285.1, ENSDART00000168271.3
      Conserved Domains (2) summary
      cd14718
      Location:320389
      bZIP_Maf_large; Basic leucine zipper (bZIP) domain of large musculoaponeurotic fibrosarcoma (Maf) proteins: a DNA-binding and dimerization domain
      pfam08383
      Location:136191
      Maf_N; Maf N-terminal region

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007131.7 Reference GRCz11 Primary Assembly

      Range
      661037..673589
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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