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    nr2c1 nuclear receptor subfamily 2, group C, member 1 [ Danio rerio (zebrafish) ]

    Gene ID: 553649, updated on 19-Mar-2019

    Summary

    Official Symbol
    nr2c1provided by ZNC
    Official Full Name
    nuclear receptor subfamily 2, group C, member 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041210-198
    See related
    Ensembl:ENSDARG00000045527
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    TR2; zgc:110672; si:dkey-183c16.2
    Orthologs

    Genomic context

    See nr2c1 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (25839274..25858956, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (25850363..25869770, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 4 NC_007115.5 (24926406..24946061, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene transmembrane and coiled-coil domain family 3 Neighboring gene NADH:ubiquinone oxidoreductase subunit A12 Neighboring gene FYVE, RhoGEF and PH domain containing 6 Neighboring gene vezatin, adherens junctions transmembrane protein

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Clone Names

    • MGC110672

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    steroid hormone receptor activity IEA
    Inferred from Electronic Annotation
    more info
     
    zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    nuclear receptor subfamily 2 group C member 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001020622.1NP_001018458.1  nuclear receptor subfamily 2 group C member 1

      See identical proteins and their annotated locations for NP_001018458.1

      Status: PROVISIONAL

      Source sequence(s)
      BC095365
      UniProtKB/TrEMBL
      Q503E0
      Related
      ENSDARP00000131714.2, ENSDART00000159528.2
      Conserved Domains (2) summary
      cd06952
      Location:365586
      NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
      cd06967
      Location:108194
      NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      25839274..25858956 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005164817.4XP_005164874.1  nuclear receptor subfamily 2 group C member 1 isoform X1

      UniProtKB/TrEMBL
      Q5RH32
      Related
      ENSDARP00000109984.2, ENSDART00000128968.4
      Conserved Domains (2) summary
      cd06952
      Location:365586
      NR_LBD_TR2_like; The ligand binding domain of the orphan nuclear receptors TR4 and TR2
      cd06967
      Location:108194
      NR_DBD_TR2_like; DNA-binding domain of the TR2 and TR4 (human testicular receptor 2 and 4) is composed of two C4-type zinc fingers

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394556.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      324380..343452 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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