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    myf6 myogenic factor 6 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 549914, updated on 20-Jun-2018

    Summary

    Official Symbol
    myf6provided by Xenbase
    Official Full Name
    myogenic factor 6provided by Xenbase
    Primary source
    Xenbase:XB-GENE-998203
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    mrf4; Xmrf4; myf6-a; myf6-b; herculin
    Orthologs

    Genomic context

    See myf6 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (42995028..42999109)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668234.1 (81275420..81279500)

    Chromosome 3 - NC_030679.1Genomic Context describing neighboring genes Neighboring gene otogelin like Neighboring gene uncharacterized LOC108646157 Neighboring gene protein tyrosine phosphatase, receptor type Q Neighboring gene myogenic factor 5 Neighboring gene lin-7 homolog A

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017160.1NP_001017160.1  myogenic factor 6

      See identical proteins and their annotated locations for NP_001017160.1

      Status: PROVISIONAL

      Source sequence(s)
      CR760833
      UniProtKB/TrEMBL
      A8E5S2
      Conserved Domains (2) summary
      smart00520
      Location:296
      BASIC; Basic domain in HLH proteins of MYOD family
      pfam00010
      Location:92143
      HLH; Helix-loop-helix DNA-binding domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030679.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      42995028..42999109
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012959093.2XP_012814547.1  myogenic factor 6 isoform X1

      Conserved Domains (2) summary
      smart00520
      Location:296
      BASIC; Basic domain in HLH proteins of MYOD family
      pfam00010
      Location:92143
      HLH; Helix-loop-helix DNA-binding domain
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