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    SHQ1 SHQ1, H/ACA ribonucleoprotein assembly factor [ Bos taurus (cattle) ]

    Gene ID: 507486, updated on 18-Feb-2019

    Summary

    Official Symbol
    SHQ1provided by VGNC
    Official Full Name
    SHQ1, H/ACA ribonucleoprotein assembly factorprovided by VGNC
    Primary source
    VGNC:VGNC:34607
    See related
    Ensembl:ENSBTAG00000005436
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See SHQ1 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 22 NC_037349.1 (28835678..28939926)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 22 AC_000179.1 (28952976..29057425)

    Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 4 regulatory subunit 2 Neighboring gene glucoside xylosyltransferase 2 Neighboring gene uncharacterized LOC101903207 Neighboring gene RING1 and YY1 binding protein

    Genomic regions, transcripts, and products

    General gene information

    Homology

    Clone Names

    • MGC128743

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    negative regulation of rRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    positive regulation of apoptotic process IEA
    Inferred from Electronic Annotation
    more info
     
    ribonucleoprotein complex assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cytosol IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    protein SHQ1 homolog
    Names
    SHQ1 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001035049.2NP_001030221.1  protein SHQ1 homolog

      See identical proteins and their annotated locations for NP_001030221.1

      Status: PROVISIONAL

      Source sequence(s)
      BC105240
      UniProtKB/Swiss-Prot
      Q3MHH1
      Related
      ENSBTAP00000007154.5, ENSBTAT00000007154.6
      Conserved Domains (2) summary
      pfam04925
      Location:245397
      SHQ1; SHQ1 protein
      cl00175
      Location:984
      alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037349.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      28835678..28939926
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024982511.1XP_024838279.1  protein SHQ1 homolog isoform X1

      Conserved Domains (1) summary
      pfam04925
      Location:194346
      SHQ1; SHQ1 protein
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