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    pdcd6ip programmed cell death 6 interacting protein [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 496474, updated on 20-Jun-2018

    Summary

    Official Symbol
    pdcd6ipprovided by Xenbase
    Official Full Name
    programmed cell death 6 interacting proteinprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-1194420
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    aip1; alix; hp95; xp95; drip4
    Orthologs

    Genomic context

    See pdcd6ip in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    103 current Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (82535362..82601464)
    102 previous assembly Xtropicalis_v7 (GCF_000004195.2) Unplaced Scaffold NW_004668289.1 (199461..265566)

    Chromosome 6 - NC_030682.1Genomic Context describing neighboring genes Neighboring gene SAC1 like phosphatidylinositide phosphatase Neighboring gene formin-like 3 Neighboring gene uncharacterized LOC108647912 Neighboring gene microRNA mir-128-2

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    • Endocytosis, organism-specific biosystem (from KEGG)
      Endocytosis, organism-specific biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...
    • Endocytosis, conserved biosystem (from KEGG)
      Endocytosis, conserved biosystemEndocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins en...

    General gene information

    Homology

    General protein information

    Preferred Names
    programmed cell death 6-interacting protein

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001011064.1NP_001011064.1  programmed cell death 6-interacting protein

      See identical proteins and their annotated locations for NP_001011064.1

      Status: PROVISIONAL

      Source sequence(s)
      BC084444
      UniProtKB/TrEMBL
      Q5XGJ5
      Conserved Domains (2) summary
      cd09235
      Location:359697
      V_Alix; Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules
      cd09240
      Location:2344
      BRO1_Alix; Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_tropicalis_v9.1 Primary Assembly

    Genomic

    1. NC_030682.1 Reference Xenopus_tropicalis_v9.1 Primary Assembly

      Range
      82535362..82601464
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012953565.2XP_012809019.1  programmed cell death 6-interacting protein isoform X2

      Conserved Domains (3) summary
      cd09235
      Location:364702
      V_Alix; Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules
      cd09240
      Location:2349
      BRO1_Alix; Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains
      pfam13949
      Location:416705
      ALIX_LYPXL_bnd; ALIX V-shaped domain binding to HIV
    2. XM_012953566.2XP_012809020.1  programmed cell death 6-interacting protein isoform X3

      Conserved Domains (3) summary
      cd09235
      Location:359697
      V_Alix; Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules
      cd09240
      Location:2344
      BRO1_Alix; Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains
      pfam13949
      Location:411700
      ALIX_LYPXL_bnd; ALIX V-shaped domain binding to HIV
    3. XM_012953564.2XP_012809018.1  programmed cell death 6-interacting protein isoform X1

      Conserved Domains (3) summary
      cd09235
      Location:364702
      V_Alix; Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules
      cd09240
      Location:2349
      BRO1_Alix; Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains
      pfam13949
      Location:416705
      ALIX_LYPXL_bnd; ALIX V-shaped domain binding to HIV
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