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    FBXO47 F-box protein 47 [ Homo sapiens (human) ]

    Gene ID: 494188, updated on 13-Feb-2019

    Summary

    Official Symbol
    FBXO47provided by HGNC
    Official Full Name
    F-box protein 47provided by HGNC
    Primary source
    HGNC:HGNC:31969
    See related
    Ensembl:ENSG00000204952 MIM:609498
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.5) See more
    Orthologs

    Genomic context

    See FBXO47 in Genome Data Viewer
    Location:
    17q12; 17q12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    109 current GRCh38.p12 (GCF_000001405.38) 17 NC_000017.11 (38936278..38967476, complement)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (37092685..37123655, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene LIM and SH3 protein 1 Neighboring gene microRNA 6779 Neighboring gene long intergenic non-protein coding RNA 672 Neighboring gene uncharacterized LOC105371767 Neighboring gene long intergenic non-protein coding RNA 2079 Neighboring gene leucine rich repeat containing 37 member A11, pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    NHGRI GWAS Catalog

    Description
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    NHGRI GWA Catalog

    General gene information

    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008777.2NP_001008777.2  F-box only protein 47

      See identical proteins and their annotated locations for NP_001008777.2

      Status: VALIDATED

      Source sequence(s)
      AC006441, AY700575, BC140879, DB340247
      Consensus CDS
      CCDS32639.1
      UniProtKB/Swiss-Prot
      Q5MNV8
      Related
      ENSP00000367319.2, ENST00000378079.2

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p12 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p12 Primary Assembly

      Range
      38936278..38967476 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011524866.3XP_011523168.1  F-box only protein 47 isoform X2

    2. XM_011524865.2XP_011523167.1  F-box only protein 47 isoform X1

    3. XM_011524867.2XP_011523169.1  F-box only protein 47 isoform X3

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