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    pygl phosphorylase, glycogen, liver [ Danio rerio (zebrafish) ]

    Gene ID: 493916, updated on 19-Mar-2019

    Summary

    Official Symbol
    pyglprovided by ZNC
    Official Full Name
    phosphorylase, glycogen, liverprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041205-1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zgc:66314
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs

    Genomic context

    See pygl in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (36846767..36863039, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (36720935..36737207, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 13 NC_007124.5 (37248633..37264905, complement)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene salvador family WW domain containing protein 1 Neighboring gene ninein (GSK3B interacting protein) Neighboring gene tripartite motif containing 9 Neighboring gene thioredoxin-related transmembrane protein 1

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    SHG alpha-glucan phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
     
    glycogen phosphorylase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    glycogen phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
     
    linear malto-oligosaccharide phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
     
    phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
     
    pyridoxal phosphate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity, transferring glycosyl groups IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    glycogen catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    glycogen phosphorylase, liver form
    Names
    phosphorylase, glycogen; liver (Hers disease, glycogen storage disease type VI)
    NP_001008538.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008538.1NP_001008538.1  glycogen phosphorylase, liver form

      See identical proteins and their annotated locations for NP_001008538.1

      Status: PROVISIONAL

      Source sequence(s)
      BC085616
      UniProtKB/TrEMBL
      Q5RKM9
      Conserved Domains (2) summary
      cd04300
      Location:29940
      GT1_Glycogen_Phosphorylase; This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of ...
      TIGR02093
      Location:32940
      P_ylase; glycogen/starch/alpha-glucan phosphorylases

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      36846767..36863039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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