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    PER1 period circadian regulator 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 489488, updated on 26-Sep-2018

    Summary

    Official Symbol
    PER1provided by VGNC
    Official Full Name
    period circadian regulator 1provided by VGNC
    Primary source
    VGNC:VGNC:44420
    See related
    Ensembl:ENSCAFG00000016984
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs

    Genomic context

    See PER1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    105 current CanFam3.1 (GCF_000002285.3) 5 NC_006587.3 (32957517..32972368, complement)

    Chromosome 5 - NC_006587.3Genomic Context describing neighboring genes Neighboring gene transfer RNA serine (anticodon CGA) Neighboring gene transfer RNA threonine (anticodon AGU) Neighboring gene vesicle associated membrane protein 2 Neighboring gene uncharacterized LOC102157040 Neighboring gene transmembrane protein 107

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_006587.3 Chromosome 5 Reference CanFam3.1 Primary Assembly

    Pathways from BioSystems

    • Circadian entrainment, organism-specific biosystem (from KEGG)
      Circadian entrainment, organism-specific biosystemCircadian entrainment is a fundamental property by which the period of the internal biological clock is entrained by recurring exogenous signals, such that the organism's endocrine and behavioral rhy...
    • Circadian entrainment, conserved biosystem (from KEGG)
      Circadian entrainment, conserved biosystemCircadian entrainment is a fundamental property by which the period of the internal biological clock is entrained by recurring exogenous signals, such that the organism's endocrine and behavioral rhy...
    • Circadian rhythm, organism-specific biosystem (from KEGG)
      Circadian rhythm, organism-specific biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of ...
    • Circadian rhythm, conserved biosystem (from KEGG)
      Circadian rhythm, conserved biosystemCircadian rhythm is an internal biological clock, which enables to sustain an approximately 24-hour rhythm in the absence of environmental cues. In mammals, the circadian clock mechanism consists of ...
    • Herpes simplex infection, organism-specific biosystem (from KEGG)
      Herpes simplex infection, organism-specific biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...
    • Herpes simplex infection, conserved biosystem (from KEGG)
      Herpes simplex infection, conserved biosystemHerpes simplex virus (HSV) infections are very common worldwide, with the prevalence of HSV-1 reaching up to 80%-90%. Primary infection with HSV takes place in the mucosa, followed by the establishme...

    General gene information

    Markers

    Homology

    General protein information

    Preferred Names
    period circadian protein homolog 1
    Names
    period circadian clock 1
    period homolog 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 105 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CanFam3.1 Primary Assembly

    Genomic

    1. NC_006587.3 Reference CanFam3.1 Primary Assembly

      Range
      32957517..32972368 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_546606.7XP_546606.4  period circadian protein homolog 1

      See identical proteins and their annotated locations for XP_546606.4

      UniProtKB/TrEMBL
      E2R0I6
      Conserved Domains (2) summary
      pfam08447
      Location:373457
      PAS_3; PAS fold
      pfam12114
      Location:10801221
      Period_C; Period protein 2/3C-terminal region
    2. XM_005620010.3XP_005620067.1  period circadian protein homolog 1

      See identical proteins and their annotated locations for XP_005620067.1

      UniProtKB/TrEMBL
      E2R0I6
      Related
      ENSCAFP00000025009.4, ENSCAFT00000026906.4
      Conserved Domains (2) summary
      pfam08447
      Location:373457
      PAS_3; PAS fold
      pfam12114
      Location:10801221
      Period_C; Period protein 2/3C-terminal region
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