Format

Send to:

Choose Destination
    • Showing Current items.

    ATF1 activating transcription factor 1 [ Gallus gallus (chicken) ]

    Gene ID: 426873, updated on 14-Feb-2019

    Summary

    Symbol
    ATF1provided by CGNC
    Full Name
    activating transcription factor 1provided by CGNC
    Primary source
    CGNC:4567
    See related
    Ensembl:ENSGALG00000033614
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs

    Genomic context

    See ATF1 in Genome Data Viewer
    Location:
    chromosome: 33
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 33 NC_008465.4 (5630035..5641694, complement)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 33 NC_008465.3 (142878..156460, complement)
    102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) Linkage Group LGE22C19W28_E50C23 NC_008465.2 (136857..150417, complement)

    Chromosome 33 - NC_008465.4Genomic Context describing neighboring genes Neighboring gene SH3 and cysteine rich domain 3 Neighboring gene signal transducer and activator of transcription 6 Neighboring gene disco interacting protein 2 homolog B Neighboring gene microRNA mir-1668 Neighboring gene La ribonucleoprotein domain family member 4

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • EGFR1 Signaling Pathway, organism-specific biosystem (from WikiPathways)
      EGFR1 Signaling Pathway, organism-specific biosystemThe androgen receptor is a member of the nuclear receptor family of ligand activated transcription factors. These receptors bind to steroid hormones, thyroid hormone, retinoids and vitamin D among ot...

    General gene information

    Homology

    General protein information

    Preferred Names
    cyclic AMP-dependent transcription factor ATF-1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_008465.4 Reference GRCg6a Primary Assembly

      Range
      5630035..5641694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004949717.3XP_004949774.1  cyclic AMP-dependent transcription factor ATF-1 isoform X1

      Conserved Domains (2) summary
      cd14690
      Location:356410
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:191226
      pKID; pKID domain
    2. XM_025145629.1XP_025001397.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

      Conserved Domains (2) summary
      cd14690
      Location:274328
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:109144
      pKID; pKID domain
    3. XM_424481.6XP_424481.3  cyclic AMP-dependent transcription factor ATF-1 isoform X4

      UniProtKB/TrEMBL
      A0A1D5NYX3
      Conserved Domains (2) summary
      cd14690
      Location:261315
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:96131
      pKID; pKID domain
    4. XM_015300261.2XP_015155747.1  cyclic AMP-dependent transcription factor ATF-1 isoform X6

      UniProtKB/TrEMBL
      A0A1D5PY63
      Conserved Domains (2) summary
      cd14690
      Location:225279
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:6095
      pKID; pKID domain
    5. XM_004949720.3XP_004949777.1  cyclic AMP-dependent transcription factor ATF-1 isoform X5

      See identical proteins and their annotated locations for XP_004949777.1

      UniProtKB/TrEMBL
      A0A1D5PT06
      Related
      ENSGALP00000056046.1, ENSGALT00000067077.2
      Conserved Domains (2) summary
      cd14690
      Location:233287
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:68103
      pKID; pKID domain
    6. XM_004949718.3XP_004949775.1  cyclic AMP-dependent transcription factor ATF-1 isoform X2

      Conserved Domains (2) summary
      cd14690
      Location:285339
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:120155
      pKID; pKID domain
    7. XM_015300262.2XP_015155748.1  cyclic AMP-dependent transcription factor ATF-1 isoform X6

      UniProtKB/TrEMBL
      A0A1D5PY63
      Conserved Domains (2) summary
      cd14690
      Location:225279
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:6095
      pKID; pKID domain
    8. XM_025145630.1XP_025001398.1  cyclic AMP-dependent transcription factor ATF-1 isoform X6

      Related
      ENSGALP00000061200.2, ENSGALT00000088534.2
      Conserved Domains (2) summary
      cd14690
      Location:225279
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:6095
      pKID; pKID domain
    Support Center