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    SDSL serine dehydratase like [ Gallus gallus (chicken) ]

    Gene ID: 417030, updated on 14-Feb-2019

    Summary

    Symbol
    SDSLprovided by CGNC
    Full Name
    serine dehydratase likeprovided by CGNC
    Primary source
    CGNC:6303
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs

    Genomic context

    See SDSL in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 15 NC_006102.5 (12864255..12866423, complement)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 15 NC_006102.4 (12646831..12649000, complement)
    102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 15 NC_006102.3 (12576756..12578925, complement)

    Chromosome 15 - NC_006102.5Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 19 Neighboring gene LIM homeobox 5 Neighboring gene phospholipase B domain containing 2 Neighboring gene solute carrier family 8 member B1

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Biosynthesis of amino acids, organism-specific biosystem (from KEGG)
      Biosynthesis of amino acids, organism-specific biosystemThis map presents a modular architecture of the biosynthesis pathways of twenty amino acids, which may be viewed as consisting of the core part and its extensions. The core part is the KEGG module fo...
    • Biosynthesis of amino acids, conserved biosystem (from KEGG)
      Biosynthesis of amino acids, conserved biosystemThis map presents a modular architecture of the biosynthesis pathways of twenty amino acids, which may be viewed as consisting of the core part and its extensions. The core part is the KEGG module fo...
    • Carbon metabolism, organism-specific biosystem (from KEGG)
      Carbon metabolism, organism-specific biosystemCarbon metabolism is the most basic aspect of life. This map presents an overall view of central carbon metabolism, where the number of carbons is shown for each compound denoted by a circle, excludi...
    • Carbon metabolism, conserved biosystem (from KEGG)
      Carbon metabolism, conserved biosystemCarbon metabolism is the most basic aspect of life. This map presents an overall view of central carbon metabolism, where the number of carbons is shown for each compound denoted by a circle, excludi...
    • Cysteine and methionine metabolism, organism-specific biosystem (from KEGG)
      Cysteine and methionine metabolism, organism-specific biosystemCysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted f...
    • Cysteine and methionine metabolism, conserved biosystem (from KEGG)
      Cysteine and methionine metabolism, conserved biosystemCysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted f...
    • Glycine, serine and threonine metabolism, organism-specific biosystem (from KEGG)
      Glycine, serine and threonine metabolism, organism-specific biosystemSerine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In ...
    • Glycine, serine and threonine metabolism, conserved biosystem (from KEGG)
      Glycine, serine and threonine metabolism, conserved biosystemSerine is derived from 3-phospho-D-glycerate, an intermediate of glycolysis [MD:M00020], and glycine is derived from serine. Threonine is an essential amino acid, which animals cannot synthesize. In ...
    • Metabolic pathways, organism-specific biosystem (from KEGG)
      Metabolic pathways, organism-specific biosystem
      Metabolic pathways
    • Valine, leucine and isoleucine biosynthesis, organism-specific biosystem (from KEGG)
      Valine, leucine and isoleucine biosynthesis, organism-specific biosystem
      Valine, leucine and isoleucine biosynthesis
    • Valine, leucine and isoleucine biosynthesis, conserved biosystem (from KEGG)
      Valine, leucine and isoleucine biosynthesis, conserved biosystem
      Valine, leucine and isoleucine biosynthesis

    General gene information

    Homology

    General protein information

    Preferred Names
    serine dehydratase-like
    NP_001185572.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001198643.1NP_001185572.1  serine dehydratase-like

      Status: VALIDATED

      Source sequence(s)
      AADN02042836, AADN02050409, BX929795
      Conserved Domains (2) summary
      pfam00291
      Location:11292
      PALP; Pyridoxal-phosphate dependent enzyme
      cl00342
      Location:15324
      Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006102.5 Reference GRCg6a Primary Assembly

      Range
      12864255..12866423 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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