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    NPTN neuroplastin [ Gallus gallus (chicken) ]

    Gene ID: 415316, updated on 14-Feb-2019

    Summary

    Symbol
    NPTNprovided by CGNC
    Full Name
    neuroplastinprovided by CGNC
    Primary source
    CGNC:1224
    See related
    Ensembl:ENSGALG00000001741
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    SDFR1
    Orthologs

    Genomic context

    See NPTN in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    104 current GRCg6a (GCF_000002315.5) 10 NC_006097.5 (2643086..2690130, complement)
    103 previous assembly Gallus_gallus-5.0 (GCF_000002315.4) 10 NC_006097.4 (2113805..2160828, complement)
    102 previous assembly Gallus_gallus-4.0 (GCF_000002315.3) 10 NC_006097.3 (1687512..1734526, complement)

    Chromosome 10 - NC_006097.5Genomic Context describing neighboring genes Neighboring gene microRNA mir-1623 Neighboring gene hyperpolarization activated cyclic nucleotide gated potassium channel 4 Neighboring gene REC114 meiotic recombination protein Neighboring gene CD276 molecule Neighboring gene zona pellucida sperm-binding protein 3-like

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General gene information

    Homology

    General protein information

    Preferred Names
    neuroplastin
    Names
    stromal cell derived factor receptor 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001293209.1NP_001280138.1  neuroplastin precursor

      Status: VALIDATED

      Source sequence(s)
      AADN03005936
      Related
      ENSGALP00000002670.5, ENSGALT00000002673.6
      Conserved Domains (4) summary
      cd00096
      Location:254328
      Ig; Immunoglobulin domain
      smart00408
      Location:44119
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:244332
      IG_like; Immunoglobulin like
      cl11960
      Location:167218
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCg6a Primary Assembly

    Genomic

    1. NC_006097.5 Reference GRCg6a Primary Assembly

      Range
      2643086..2690130 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015278826.2XP_015134312.1  neuroplastin isoform X1

      UniProtKB/TrEMBL
      A0A1D5PNU7
      Related
      ENSGALP00000054541.1, ENSGALT00000072653.2
      Conserved Domains (3) summary
      cd00096
      Location:138212
      Ig; Immunoglobulin domain
      smart00410
      Location:128216
      IG_like; Immunoglobulin like
      cl11960
      Location:51102
      Ig; Immunoglobulin domain
    2. XM_025153812.1XP_025009580.1  neuroplastin isoform X2

      Related
      ENSGALP00000073683.1, ENSGALT00000094732.1
      Conserved Domains (2) summary
      smart00410
      Location:36118
      IG_like; Immunoglobulin like
      cl28434
      Location:133216
      I-set; Immunoglobulin I-set domain
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