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    POU1F1 POU class 1 homeobox 1 [ Sus scrofa (pig) ]

    Gene ID: 397325, updated on 2-Oct-2018

    Summary

    Gene symbol
    POU1F1
    Gene description
    POU class 1 homeobox 1
    See related
    Ensembl:ENSSSCG00000011996
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Suina; Suidae; Sus
    Also known as
    Pit1; GHF-1; PIT-1; PIT-I
    Expression
    Low expression observed in reference dataset See more
    Orthologs

    Genomic context

    See POU1F1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (168510671..168530394)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (179453195..179469328)

    Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene 5-hydroxytryptamine receptor 1F Neighboring gene uncharacterized LOC110256256 Neighboring gene charged multivesicular body protein 2B Neighboring gene vestigial like family member 3

    Genomic regions, transcripts, and products

    Bibliography

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GO

    Function Evidence Code Pubs
    DNA-binding transcription factor activity, RNA polymerase II-specific ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    positive regulation of transcription by RNA polymerase II ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    pituitary-specific positive transcription factor 1
    Names
    POU-domain protein
    POU-domain transcriptional regulator
    growth hormone factor 1
    pituitary-specific transcription factor

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_214163.1NP_999328.1  pituitary-specific positive transcription factor 1

      See identical proteins and their annotated locations for NP_999328.1

      Status: PROVISIONAL

      Source sequence(s)
      AF016251
      UniProtKB/Swiss-Prot
      Q04788
      UniProtKB/TrEMBL
      D9ZNP5
      Related
      ENSSSCP00000012779.1, ENSSSCT00000013125.2
      Conserved Domains (2) summary
      smart00352
      Location:124198
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:217270
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

      Range
      168510671..168530394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021068539.1XP_020924198.1  pituitary-specific positive transcription factor 1 isoform X2

      Conserved Domains (2) summary
      smart00352
      Location:147221
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:240293
      Homeobox; Homeobox domain
    2. XM_005657130.3XP_005657187.1  pituitary-specific positive transcription factor 1 isoform X1

      Conserved Domains (2) summary
      smart00352
      Location:150224
      POU; Found in Pit-Oct-Unc transcription factors
      pfam00046
      Location:243296
      Homeobox; Homeobox domain
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