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    srsf1b serine and arginine rich splicing factor 1b [ Danio rerio (zebrafish) ]

    Gene ID: 393565, updated on 7-Apr-2019

    Summary

    Official Symbol
    srsf1bprovided by ZNC
    Official Full Name
    serine and arginine rich splicing factor 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-1467
    See related
    Ensembl:ENSDARG00000017843
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    sfrs1; sfrs1b; zgc:65898; zgc:76897; wu:fb80g05; zgc:111894
    Orthologs

    Genomic context

    See srsf1b in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (39568895..39577739, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (39523833..39532683, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 21 NC_007132.5 (38403754..38412607, complement)

    Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene septin 4a Neighboring gene dynein, light chain, LC8-type 2b Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class S Neighboring gene aldolase C, fructose-bisphosphate, b

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Clone Names

    • MGC65898

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    RNA splicing IEA
    Inferred from Electronic Annotation
    more info
     
    mRNA cis splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of alternative mRNA splicing, via spliceosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear speck IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    serine/arginine-rich splicing factor 1B
    Names
    splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)
    splicing factor, arginine/serine-rich 1b

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200593.2NP_956887.2  serine/arginine-rich splicing factor 1B

      See identical proteins and their annotated locations for NP_956887.2

      Status: PROVISIONAL

      Source sequence(s)
      BC066682
      UniProtKB/Swiss-Prot
      Q6NYA0
      Related
      ENSDARP00000116886.2, ENSDART00000143566.4
      Conserved Domains (3) summary
      COG0724
      Location:787
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12597
      Location:1689
      RRM1_SRSF1; RNA recognition motif 1 in serine/arginine-rich splicing factor 1 (SRSF1) and similar proteins
      cd12601
      Location:120192
      RRM2_SRSF1_like; RNA recognition motif 2 in serine/arginine-rich splicing factor SRSF1, SRSF9 and similar proteins

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007132.7 Reference GRCz11 Primary Assembly

      Range
      39568895..39577739 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_659427.3 RNA Sequence

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