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    agps alkylglycerone phosphate synthase [ Danio rerio (zebrafish) ]

    Gene ID: 386801, updated on 14-Feb-2019

    Summary

    Official Symbol
    agpsprovided by ZNC
    Official Full Name
    alkylglycerone phosphate synthaseprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-031118-14
    See related
    Ensembl:ENSDARG00000042821
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    fd16e06; zgc:56718; wu:fd16e06
    Orthologs

    Genomic context

    See agps in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (1589672..1639991, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (1587384..1637817, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 9 NC_007120.5 (1610337..1629312, complement) , (1578331..1607028, complement)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene si:ch211-222f23.6 Neighboring gene phosphodiesterase 11a Neighboring gene microRNA 148 Neighboring gene nuclear factor, erythroid 2-like 2a

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    FAD binding IEA
    Inferred from Electronic Annotation
    more info
     
    alkylglycerone-phosphate synthase activity IEA
    Inferred from Electronic Annotation
    more info
     
    catalytic activity IEA
    Inferred from Electronic Annotation
    more info
     
    flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
     
    transferase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    ether lipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    lipid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    oxidation-reduction process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    peroxisome IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    alkyldihydroxyacetonephosphate synthase, peroxisomal
    NP_956407.1
    XP_021334302.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200113.1NP_956407.1  alkyldihydroxyacetonephosphate synthase, peroxisomal

      See identical proteins and their annotated locations for NP_956407.1

      Status: PROVISIONAL

      Source sequence(s)
      BC045516
      UniProtKB/TrEMBL
      Q7ZVJ9
      Related
      ENSDARP00000062849.4, ENSDART00000062850.6
      Conserved Domains (3) summary
      COG0277
      Location:175623
      GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
      pfam01565
      Location:177318
      FAD_binding_4; FAD binding domain
      pfam02913
      Location:355628
      FAD-oxidase_C; FAD linked oxidases, C-terminal domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      1589672..1639991 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021478627.1XP_021334302.1  alkyldihydroxyacetonephosphate synthase, peroxisomal isoform X1

      Conserved Domains (1) summary
      COG0277
      Location:175589
      GlcD; FAD/FMN-containing dehydrogenase [Energy production and conversion]
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