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    Hebp1 heme binding protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362454, updated on 4-Dec-2018

    Summary

    Official Symbol
    Hebp1provided by RGD
    Official Full Name
    heme binding protein 1provided by RGD
    Primary source
    RGD:1304581
    See related
    Ensembl:ENSRNOG00000000024
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Liver (RPKM 150.7), Spleen (RPKM 116.2) and 8 other tissues See more
    Orthologs

    Genomic context

    See Hebp1 in Genome Data Viewer
    Location:
    4q43
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (168903586..168933102, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 4 NC_005103.3 (233174075..233203308, complement)

    Chromosome 4 - NC_005103.4Genomic Context describing neighboring genes Neighboring gene 40S ribosomal protein S17-like Neighboring gene G protein-coupled receptor, class C, group 5, member D Neighboring gene family with sequence similarity 234, member B Neighboring gene germ cell associated 1 Neighboring gene phosphatidylethanolamine binding protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    heme binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    heme binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108651.1NP_001102121.1  heme-binding protein 1

      See identical proteins and their annotated locations for NP_001102121.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473964
      Conserved Domains (1) summary
      pfam04832
      Location:30131
      SOUL; SOUL heme-binding protein

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005103.4 Reference Rnor_6.0 Primary Assembly

      Range
      168903586..168933102 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006237529.2XP_006237591.1  heme-binding protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006237591.1

      UniProtKB/TrEMBL
      B4F7C7
      Related
      ENSRNOP00000000025.7, ENSRNOT00000000025.7
      Conserved Domains (1) summary
      pfam04832
      Location:30188
      SOUL; SOUL heme-binding protein

    Alternate Rn_Celera

    Genomic

    1. AC_000072.1 Alternate Rn_Celera

      Range
      156588144..156600940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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