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    RpL9 Ribosomal protein L9 [ Drosophila melanogaster (fruit fly) ]

    Gene ID: 34526, updated on 10-Jan-2019

    Summary

    Official Symbol
    RpL9provided by FlyBase
    Official Full Name
    Ribosomal protein L9provided by FlyBase
    Primary source
    FLYBASE:FBgn0015756
    Locus tag
    Dmel_CG6141
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Drosophila melanogaster (old-lineage: Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
    Also known as
    anon-EST:fe3A6; anon-WO0153538.25; anon-WO0153538.26; anon-WO0153538.27; CG6141; Dmel\CG6141; L9; M(2)32D; Rp L9; rpL9; Rpl9

    Genomic context

    See RpL9 in Genome Data Viewer
    Location:
    32C1-32C1; 2-44 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    Release 6.18 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (11002758..11004189, complement)
    Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (11002758..11004189, complement)

    Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene aubergine Neighboring gene lectin-33A Neighboring gene Nucleoporin 154kD Neighboring gene Arginine methyltransferase 8 Neighboring gene ncRNA Neighboring gene Deoxyuridine triphosphatase

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    • Homologs of the RpL9 gene: The RpL9 gene is conserved in human, chimpanzee, Rhesus monkey, dog, mouse, rat, chicken, zebrafish, mosquito, C.elegans, S.cerevisiae, K.lactis, E.gossypii, S.pombe, M.oryzae, N.crassa, A.thaliana, rice, and frog.
    • Orthologs

    Gene Ontology Provided by FlyBase

    Function Evidence Code Pubs
    rRNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    structural constituent of ribosome HDA PubMed 
    structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    structural constituent of ribosome TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    cytoplasmic translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasmic translation IC
    Inferred by Curator
    more info
    PubMed 
    cytoplasmic translation TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytosolic large ribosomal subunit TAS
    Traceable Author Statement
    more info
    PubMed 
    cytosolic ribosome HDA PubMed 

    General protein information

    Preferred Names
    ribosomal protein L9
    Names
    CG6141-PA
    CG6141-PB
    CG6141-PC
    RpL9-PA
    RpL9-PB
    RpL9-PC
    anon-fast-evolving-3A6

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NT_033779.5 Reference assembly

      Range
      11002758..11004189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001298897.1NP_001285826.1  ribosomal protein L9, isoform C [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_001285826.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P50882
      UniProtKB/TrEMBL
      X2JDU0
      Related
      FBpp0309201, FBtr0340226
      Conserved Domains (2) summary
      PTZ00027
      Location:1189
      PTZ00027; 60S ribosomal protein L6; Provisional
      pfam00347
      Location:97176
      Ribosomal_L6; Ribosomal protein L6
    2. NM_057813.4NP_477161.1  ribosomal protein L9, isoform A [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_477161.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P50882
      UniProtKB/TrEMBL
      X2JDU0
      Related
      FBpp0079752, FBtr0080163
      Conserved Domains (2) summary
      PTZ00027
      Location:1189
      PTZ00027; 60S ribosomal protein L6; Provisional
      pfam00347
      Location:97176
      Ribosomal_L6; Ribosomal protein L6
    3. NM_164955.2NP_723644.1  ribosomal protein L9, isoform B [Drosophila melanogaster]

      See identical proteins and their annotated locations for NP_723644.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P50882
      UniProtKB/TrEMBL
      X2JDU0
      Related
      FBpp0079753, FBtr0080164
      Conserved Domains (2) summary
      PTZ00027
      Location:1189
      PTZ00027; 60S ribosomal protein L6; Provisional
      pfam00347
      Location:97176
      Ribosomal_L6; Ribosomal protein L6
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