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    pla1a phospholipase A1 member A [ Danio rerio (zebrafish) ]

    Gene ID: 334017, updated on 12-May-2019

    Summary

    Official Symbol
    pla1aprovided by ZNC
    Official Full Name
    phospholipase A1 member Aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5949
    See related
    Ensembl:ENSDARG00000102176
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zgc:77160; wu:fi26h09
    Orthologs

    Genomic context

    See pla1a in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (21214940..21226132)
    105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (21404071..21415263)
    103 previous assembly Zv9 (GCF_000002035.4) 9 NC_007120.5 (22248285..22259477)

    Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1 Neighboring gene uncharacterized LOC100535312 Neighboring gene popeye domain containing 2 Neighboring gene cytochrome c oxidase copper chaperone COX17 Neighboring gene hyperpolarization activated cyclic nucleotide-gated potassium channel 5

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    carboxylic ester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    lipase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    phospholipase A1 activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    lipid catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    lipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    phospholipase A1 member A
    NP_996939.1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207056.1NP_996939.1  phospholipase A1 member A precursor

      See identical proteins and their annotated locations for NP_996939.1

      Status: PROVISIONAL

      Source sequence(s)
      BC066406
      UniProtKB/Swiss-Prot
      Q6NYZ4
      Related
      ENSDARP00000136350.1, ENSDART00000171570.2
      Conserved Domains (2) summary
      cd00707
      Location:48336
      Pancreat_lipase_like; Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the ...
      pfam00151
      Location:21340
      Lipase; Lipase

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007120.7 Reference GRCz11 Primary Assembly

      Range
      21214940..21226132
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394749.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      84978..96118
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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