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    atf1 activating transcription factor 1 [ Danio rerio (zebrafish) ]

    Gene ID: 325609, updated on 14-Feb-2019

    Summary

    Official Symbol
    atf1provided by ZNC
    Official Full Name
    activating transcription factor 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4334
    See related
    Ensembl:ENSDARG00000044301
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zgc:64099; wu:fc92c07

    Genomic context

    See atf1 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (39509434..39521736, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (39511898..39524200, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 6 NC_007117.5 (39440298..39452600, complement)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene si:ch211-173n18.3 Neighboring gene si:ch211-173n18.4 Neighboring gene si:dkeyp-80d11.1 Neighboring gene disco-interacting protein 2 homolog Bb Neighboring gene activating transcription factor 7b

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein heterodimerization activity IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    transcription factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    cyclic AMP-dependent transcription factor ATF-1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199723.1NP_956017.1  cyclic AMP-dependent transcription factor ATF-1

      See identical proteins and their annotated locations for NP_956017.1

      Status: PROVISIONAL

      Source sequence(s)
      BC053252
      UniProtKB/TrEMBL
      Q7T351
      Related
      ENSDARP00000065037.4, ENSDART00000065038.5
      Conserved Domains (2) summary
      cd14690
      Location:248302
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:87118
      pKID; pKID domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      39509434..39521736 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394662.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      78083..91525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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