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    Atf1 activating transcription factor 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 315305, updated on 18-Nov-2018

    Summary

    Official Symbol
    Atf1provided by RGD
    Official Full Name
    activating transcription factor 1provided by RGD
    Primary source
    RGD:1307360
    See related
    Ensembl:ENSRNOG00000061088
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Atf-1
    Annotation information
    Annotation category: partial on reference assembly
    Expression
    Biased expression in Thymus (RPKM 217.7), Spleen (RPKM 181.6) and 9 other tissues See more
    Orthologs

    Genomic context

    See Atf1 in Genome Data Viewer
    Location:
    7q36
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (141882261..141924790)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 7 NC_005106.3 (139692651..139735616)

    Chromosome 7 - NC_005106.4Genomic Context describing neighboring genes Neighboring gene La ribonucleoprotein domain family, member 4 Neighboring gene disco-interacting protein 2 homolog B Neighboring gene DNA-(apurinic or apyrimidinic site) lyase-like Neighboring gene transmembrane serine protease 12 Neighboring gene methyltransferase like 7A Neighboring gene HIG1 hypoxia inducible domain family, member 1C

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    ATF1-ATF4 transcription factor complex IEA
    Inferred from Electronic Annotation
    more info
     
    ATF1-ATF4 transcription factor complex ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    transcription factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transcription factor complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    transcription factor complex ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    cyclic AMP-dependent transcription factor ATF-1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100895.1NP_001094365.1  cyclic AMP-dependent transcription factor ATF-1

      See identical proteins and their annotated locations for NP_001094365.1

      Status: VALIDATED

      Source sequence(s)
      BC091222, CN541536, CO565801
      UniProtKB/TrEMBL
      F7FD47, Q5BK34
      Related
      ENSRNOP00000073278.1, ENSRNOT00000087298.1
      Conserved Domains (2) summary
      cd14690
      Location:212266
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:4781
      pKID; pKID domain

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005106.4 Reference Rnor_6.0 Primary Assembly

      Range
      141882261..141924790
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000075.1 Alternate Rn_Celera

      Range
      127839929..127882623
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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