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    Acot9 acyl-CoA thioesterase 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 302640, updated on 18-Apr-2019

    Summary

    Official Symbol
    Acot9provided by RGD
    Official Full Name
    acyl-CoA thioesterase 9provided by RGD
    Primary source
    RGD:1359188
    See related
    Ensembl:ENSRNOG00000003782
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Acate2
    Expression
    Biased expression in Adrenal (RPKM 264.7), Heart (RPKM 225.6) and 9 other tissues See more
    Orthologs

    Genomic context

    See Acot9 in Genome Data Viewer
    Location:
    Xq21
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (43543069..43592200, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) X NC_005120.3 (43846064..43895821, complement)

    Chromosome X - NC_005120.4Genomic Context describing neighboring genes Neighboring gene peroxiredoxin 4 Neighboring gene E3 ubiquitin-protein ligase RNF168-like Neighboring gene 60S ribosomal protein L7 pseudogene Neighboring gene spermidine/spermine N1-acetyl transferase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    acetyl-CoA hydrolase activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    acyl-CoA hydrolase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acyl-CoA hydrolase activity ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Process Evidence Code Pubs
    acyl-CoA metabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acyl-CoA metabolic process ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    acyl-coenzyme A thioesterase 9, mitochondrial
    Names
    acyl-Coenzyme A thioesterase 2, mitochondrial

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013960.1NP_001013982.1  acyl-coenzyme A thioesterase 9, mitochondrial

      See identical proteins and their annotated locations for NP_001013982.1

      Status: PROVISIONAL

      Source sequence(s)
      BC085822
      UniProtKB/TrEMBL
      Q5U2X8
      Related
      ENSRNOP00000005033.4, ENSRNOT00000005033.5
      Conserved Domains (1) summary
      cd03442
      Location:286406
      BFIT_BACH; Brown fat-inducible thioesterase (BFIT). Brain acyl-CoA hydrolase (BACH). These enzymes deacylate long-chain fatty acids by hydrolyzing acyl-CoA thioesters to free fatty acids and CoA-SH. Eukaryotic members of this family are expressed in brain, testis, ...

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005120.4 Reference Rnor_6.0 Primary Assembly

      Range
      43543069..43592200 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000089.1 Alternate Rn_Celera

      Range
      40701964..40751523 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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