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    Cisd1 CDGSH iron sulfur domain 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 294362, updated on 18-Apr-2019

    Summary

    Official Symbol
    Cisd1provided by RGD
    Official Full Name
    CDGSH iron sulfur domain 1provided by RGD
    Primary source
    RGD:1309529
    See related
    Ensembl:ENSRNOG00000000610
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    MitoNEET; RGD1309529
    Expression
    Biased expression in Kidney (RPKM 1837.9), Heart (RPKM 1394.8) and 8 other tissues See more
    Orthologs

    Genomic context

    See Cisd1 in Genome Data Viewer
    Location:
    20p11
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (18493538..18506923)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 20 NC_005119.3 (20659781..20673162)

    Chromosome 20 - NC_005119.4Genomic Context describing neighboring genes Neighboring gene inositol polyphosphate multikinase Neighboring gene 60S ribosomal protein L39 Neighboring gene MICOS complex subunit Mic10 pseudogene Neighboring gene ubiquitin-conjugating enzyme E2D 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    • Adipogenesis, organism-specific biosystem (from WikiPathways)
      Adipogenesis, organism-specific biosystemThe different classess of factors involved in adipogenesis are shown. Adipogenesis is the process by which fat cells differentiate from predadipocytes to adipocytes (fat cells). Adipose tissue, compo...

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    2 iron, 2 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
     
    identical protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    regulation of cellular respiration IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of cellular respiration ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasmic side of mitochondrial outer membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    mitochondrial outer membrane ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    CDGSH iron-sulfur domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106385.2NP_001099855.1  CDGSH iron-sulfur domain-containing protein 1

      See identical proteins and their annotated locations for NP_001099855.1

      Status: PROVISIONAL

      Source sequence(s)
      BC159419
      UniProtKB/Swiss-Prot
      B0K020
      Related
      ENSRNOP00000000749.4, ENSRNOT00000000749.6
      Conserved Domains (2) summary
      smart00704
      Location:5593
      ZnF_CDGSH; CDGSH-type zinc finger. Function unknown
      pfam10660
      Location:1241
      MitoNEET_N; Iron-containing outer mitochondrial membrane protein N-terminus

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005119.4 Reference Rnor_6.0 Primary Assembly

      Range
      18493538..18506923
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017601618.1XP_017457107.1  CDGSH iron-sulfur domain-containing protein 1 isoform X1

    Alternate Rn_Celera

    Genomic

    1. AC_000088.1 Alternate Rn_Celera

      Range
      18654774..18668172
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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