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    Krt13 keratin 13 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 287699, updated on 8-Dec-2018

    Summary

    Official Symbol
    Krt13provided by RGD
    Official Full Name
    keratin 13provided by RGD
    Primary source
    RGD:1302937
    See related
    Ensembl:ENSRNOG00000014070
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ka13
    Summary
    human homolog plays a role in epidermal development [RGD, Feb 2006]
    Expression
    Restricted expression toward (RPKM 2002.1) See more
    Orthologs

    Genomic context

    See Krt13 in Genome Data Viewer
    Location:
    10q31
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (88032130..88036040, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 10 NC_005109.3 (87824805..87828715, complement)

    Chromosome 10 - NC_005109.4Genomic Context describing neighboring genes Neighboring gene keratin 35 Neighboring gene keratin 36 Neighboring gene keratin 15 Neighboring gene keratin 19

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    cellular response to retinoic acid IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    cytoskeleton organization ISO
    Inferred from Sequence Orthology
    more info
     
    response to radiation IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    tongue morphogenesis IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    extracellular exosome ISO
    Inferred from Sequence Orthology
    more info
     
    intermediate filament IEA
    Inferred from Electronic Annotation
    more info
     
    intermediate filament cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    keratin filament ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    keratin, type I cytoskeletal 13
    Names
    CK-13
    K13
    cytokeratin-13
    keratin 13, type I
    type I keratin KA13

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004021.1NP_001004021.1  keratin, type I cytoskeletal 13

      See identical proteins and their annotated locations for NP_001004021.1

      Status: PROVISIONAL

      Source sequence(s)
      BK004044
      UniProtKB/Swiss-Prot
      Q6IFV4
      Related
      ENSRNOP00000018851.3, ENSRNOT00000018851.3
      Conserved Domains (2) summary
      pfam00038
      Location:95407
      Filament; Intermediate filament protein
      pfam08286
      Location:210257
      Spc24; Spc24 subunit of Ndc80

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005109.4 Reference Rnor_6.0 Primary Assembly

      Range
      88032130..88036040 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000078.1 Alternate Rn_Celera

      Range
      83771488..83775398 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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