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    CXCL5 chemokine (C-X-C motif) ligand 5 [ Bos taurus (cattle) ]

    Gene ID: 281735, updated on 14-Jan-2019

    Summary

    Gene symbol
    CXCL5
    Gene description
    chemokine (C-X-C motif) ligand 5
    See related
    BGD:BT17898; Ensembl:ENSBTAG00000009812
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    GCP2; CXCL6; GCP-2; SCYB6

    Genomic context

    See CXCL5 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 6 NC_037333.1 (88897012..88899130)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 6 AC_000163.1 (90645964..90648082)

    Chromosome 6 - NC_037333.1Genomic Context describing neighboring genes Neighboring gene cytosolic 5'-nucleotidase 3A Neighboring gene uncharacterized LOC112447102 Neighboring gene pro-platelet basic protein Neighboring gene platelet factor 4

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    chemokine activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    heparin binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    antimicrobial humoral immune response mediated by antimicrobial peptide IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cellular response to lipopolysaccharide IDA
    Inferred from Direct Assay
    more info
    PubMed 
    defense response to bacterium IEA
    Inferred from Electronic Annotation
    more info
     
    neutrophil activation IDA
    Inferred from Direct Assay
    more info
    PubMed 
    neutrophil chemotaxis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    regulation of signaling receptor activity IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    C-X-C motif chemokine 6
    Names
    chemokine (C-X-C motif) ligand 6 (granulocyte chemotactic protein 2)
    granulocyte chemotactic protein 2
    inducible cytokine subfamily B (Cys-X-Cys), member 6
    small-inducible cytokine B6

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_174300.2NP_776725.1  C-X-C motif chemokine 6 precursor

      See identical proteins and their annotated locations for NP_776725.1

      Status: PROVISIONAL

      Source sequence(s)
      AF149249
      UniProtKB/Swiss-Prot
      P80221
      Related
      ENSBTAP00000012939.3, ENSBTAT00000012939.4
      Conserved Domains (1) summary
      cd00273
      Location:45106
      Chemokine_CXC; Chemokine_CXC: 1 of 4 subgroup designations based on the arrangement of the two N-terminal cysteine residues; includes a number of secreted growth factors and interferons involved in mitogenic, chemotactic, and inflammatory activity; many members ...

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037333.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      88897012..88899130
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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