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    CD9 CD9 molecule [ Bos taurus (cattle) ]

    Gene ID: 280746, updated on 30-Apr-2019

    Summary

    Official Symbol
    CD9provided by VGNC
    Official Full Name
    CD9 moleculeprovided by VGNC
    Primary source
    VGNC:VGNC:27053
    See related
    BGD:BT24423; Ensembl:ENSBTAG00000014764
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs

    Genomic context

    See CD9 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ARS-UCD1.2 (GCF_002263795.1) 5 NC_037332.1 (104123604..104159285, complement)
    105 previous assembly Bos_taurus_UMD_3.1.1 (GCF_000003055.6) 5 AC_000162.1 (104505426..104544977, complement)

    Chromosome 5 - NC_037332.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100847453 Neighboring gene TNF receptor superfamily member 1A Neighboring gene pleckstrin homology and RhoGEF domain containing G6 Neighboring gene uncharacterized LOC101906999 Neighboring gene von Willebrand factor Neighboring gene uncharacterized LOC112446761

    Genomic regions, transcripts, and products

    Bibliography

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    integrin binding ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Process Evidence Code Pubs
    cell adhesion ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    cellular response to low-density lipoprotein particle stimulus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    fusion of sperm to egg plasma membrane involved in single fertilization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    myoblast fusion involved in skeletal muscle regeneration ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    negative regulation of cell proliferation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    negative regulation of cellular component movement IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of platelet aggregation ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    paranodal junction assembly ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    receptor internalization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    regulation of macrophage migration IEA
    Inferred from Electronic Annotation
    more info
     
    single fertilization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    sperm-egg recognition ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    Component Evidence Code Pubs
    external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular exosome IEA
    Inferred from Electronic Annotation
    more info
     
    membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    plasma membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
     

    General protein information

    Preferred Names
    CD9 antigen
    Names
    CD9 antigen (p24)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173900.2NP_776325.1  CD9 antigen

      See identical proteins and their annotated locations for NP_776325.1

      Status: PROVISIONAL

      Source sequence(s)
      M81720
      UniProtKB/Swiss-Prot
      P30932
      Related
      ENSBTAP00000019643.5, ENSBTAT00000019643.5
      Conserved Domains (2) summary
      cd03152
      Location:109191
      CD9_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans ...
      pfam00335
      Location:9219
      Tetraspannin; Tetraspanin family

    RefSeqs of Annotated Genomes: Bos taurus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD1.2 Primary Assembly

    Genomic

    1. NC_037332.1 Reference ARS-UCD1.2 Primary Assembly

      Range
      104123604..104159285 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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