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    cers4a ceramide synthase 4a [ Danio rerio (zebrafish) ]

    Gene ID: 259250, updated on 14-Feb-2019

    Summary

    Official Symbol
    cers4aprovided by ZNC
    Official Full Name
    ceramide synthase 4aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-020808-1
    See related
    Ensembl:ENSDARG00000031387
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    trh1

    Genomic context

    See cers4a in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 22 NC_007133.7 (4707547..4733106)
    105 previous assembly GRCz10 (GCF_000002035.5) 22 NC_007133.6 (4323280..4348731)
    103 previous assembly Zv9 (GCF_000002035.4) 22 NC_007133.5 (4284357..4309918)

    Chromosome 22 - NC_007133.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108181225 Neighboring gene fibrillin 2b Neighboring gene kelch-like protein 12 Neighboring gene transfer RNA aspartic acid (anticodon GUC)

    Genomic regions, transcripts, and products

    Pathways from BioSystems

    General gene information

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    sphingosine N-acyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    ceramide biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153670.1NP_705956.1  ceramide synthase 4

      See identical proteins and their annotated locations for NP_705956.1

      Status: PROVISIONAL

      Source sequence(s)
      AF395740
      UniProtKB/TrEMBL
      Q90YY6
      Related
      ENSDARP00000042193.5, ENSDART00000042194.6
      Conserved Domains (2) summary
      smart00724
      Location:137337
      TLC; TRAM, LAG1 and CLN8 homology domains
      cd00086
      Location:76132
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007133.7 Reference GRCz11 Primary Assembly

      Range
      4707547..4733106
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021469300.1XP_021324975.1  ceramide synthase 4 isoform X1

      Conserved Domains (2) summary
      cd00086
      Location:76132
      homeodomain; Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
      cl02759
      Location:137210
      TRAM_LAG1_CLN8; TLC domain
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