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    Zscan2 zinc finger and SCAN domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 22691, updated on 31-Jan-2019

    Summary

    Official Symbol
    Zscan2provided by MGI
    Official Full Name
    zinc finger and SCAN domain containing 2provided by MGI
    Primary source
    MGI:MGI:99176
    See related
    Ensembl:ENSMUSG00000038797
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Zfp29; Zfp-29
    Expression
    Broad expression in testis adult (RPKM 7.0), CNS E14 (RPKM 4.3) and 23 other tissues See more
    Orthologs

    Genomic context

    See Zscan2 in Genome Data Viewer
    Location:
    7 D3; 7 45.71 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (80860737..80878675)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (88006994..88021400)

    Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene CREB regulated transcription coactivator 3 Neighboring gene predicted gene 15880 Neighboring gene IQ motif containing GTPase activating protein 1 Neighboring gene predicted gene, 18392 Neighboring gene predicted gene, 32112 Neighboring gene WD repeat domain 73 Neighboring gene neuromedin B

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    cell differentiation IEA
    Inferred from Electronic Annotation
    more info
     
    multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of transcription, DNA-templated IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    positive regulation of transcription, DNA-templated IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    regulation of transcription, DNA-templated IEA
    Inferred from Electronic Annotation
    more info
     
    spermatogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    colocalizes_with nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    colocalizes_with nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    zinc finger and SCAN domain-containing protein 2
    Names
    zinc finger protein 29

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_009553.2NP_033579.1  zinc finger and SCAN domain-containing protein 2

      See identical proteins and their annotated locations for NP_033579.1

      Status: PROVISIONAL

      Source sequence(s)
      BC046961
      Consensus CDS
      CCDS21399.1
      UniProtKB/Swiss-Prot
      Q07230
      Related
      ENSMUSP00000042321.7, ENSMUST00000044115.8
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69132
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

      Range
      80860737..80878675
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006540811.3XP_006540874.1  zinc finger and SCAN domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006540874.1

      UniProtKB/Swiss-Prot
      Q07230
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69132
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    2. XM_006540809.3XP_006540872.1  zinc finger and SCAN domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006540872.1

      UniProtKB/Swiss-Prot
      Q07230
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69132
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    3. XM_006540806.3XP_006540869.1  zinc finger and SCAN domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006540869.1

      UniProtKB/Swiss-Prot
      Q07230
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69132
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    4. XM_006540807.3XP_006540870.1  zinc finger and SCAN domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006540870.1

      UniProtKB/Swiss-Prot
      Q07230
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69132
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    5. XM_006540805.3XP_006540868.1  zinc finger and SCAN domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006540868.1

      UniProtKB/Swiss-Prot
      Q07230
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69132
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    6. XM_006540808.3XP_006540871.1  zinc finger and SCAN domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006540871.1

      UniProtKB/Swiss-Prot
      Q07230
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69132
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    7. XM_006540812.3XP_006540875.1  zinc finger and SCAN domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006540875.1

      UniProtKB/Swiss-Prot
      Q07230
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69132
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
    8. XM_006540810.3XP_006540873.1  zinc finger and SCAN domain-containing protein 2 isoform X1

      See identical proteins and their annotated locations for XP_006540873.1

      UniProtKB/Swiss-Prot
      Q07230
      Conserved Domains (5) summary
      COG5048
      Location:220600
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:364384
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:222244
      zf-C2H2; Zinc finger, C2H2 type
      pfam02023
      Location:69132
      SCAN; SCAN domain
      pfam13465
      Location:376401
      zf-H2C2_2; Zinc-finger double domain
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