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    Ly75 lymphocyte antigen 75 [ Mus musculus (house mouse) ]

    Gene ID: 17076, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ly75provided by MGI
    Official Full Name
    lymphocyte antigen 75provided by MGI
    Primary source
    MGI:MGI:106662
    See related
    Ensembl:ENSMUSG00000026980
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    CD205; DEC205; DEC-205
    Expression
    Broad expression in thymus adult (RPKM 6.5), placenta adult (RPKM 5.6) and 16 other tissues See more
    Orthologs

    Genomic context

    See Ly75 in Genome Data Viewer
    Location:
    2; 2 C1.1
    Exon count:
    35
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (60293760..60383231, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (60131817..60221288, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene membrane-associated ring finger (C3HC4) 7 Neighboring gene CD302 antigen Neighboring gene ribosomal protein L10A pseudogene Neighboring gene predicted gene 13580 Neighboring gene phospholipase A2 receptor 1 Neighboring gene predicted gene 13583

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
     
    transmembrane signaling receptor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Process Evidence Code Pubs
    endocytosis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    external side of plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    lymphocyte antigen 75
    Names
    ly-75

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013825.3NP_038853.2  lymphocyte antigen 75 precursor

      See identical proteins and their annotated locations for NP_038853.2

      Status: PROVISIONAL

      Source sequence(s)
      AF395445
      Consensus CDS
      CCDS38126.1
      UniProtKB/Swiss-Prot
      Q60767
      Related
      ENSMUSP00000028362.8, ENSMUST00000028362.8
      Conserved Domains (5) summary
      smart00059
      Location:162209
      FN2; Fibronectin type 2 domain
      cd00037
      Location:14071514
      CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
      smart00034
      Location:216341
      CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)
      smart00458
      Location:38125
      RICIN; Ricin-type beta-trefoil
      cd00161
      Location:40125
      RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      60293760..60383231 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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