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    Mllt3 MLLT3, super elongation complex subunit [ Rattus norvegicus (Norway rat) ]

    Gene ID: 114510, updated on 18-Apr-2019

    Summary

    Official Symbol
    Mllt3provided by RGD
    Official Full Name
    MLLT3, super elongation complex subunitprovided by RGD
    Primary source
    RGD:620940
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Af9; Af-9
    Summary
    mouse homolog regulates pattern formation during embryogenesis [RGD, Feb 2006]
    Annotation information
    Annotation category: partial on reference assembly
    Expression
    Biased expression in Muscle (RPKM 157.5), Thymus (RPKM 100.1) and 9 other tissues See more
    Orthologs

    Genomic context

    See Mllt3 in Genome Data Viewer
    Location:
    5q32
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (106103498..106202559, complement)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (110089246..110183694, complement)

    Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108350994 Neighboring gene uncharacterized LOC108350995 Neighboring gene uncharacterized LOC103692403 Neighboring gene uncharacterized LOC108351134

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Pathways from BioSystems

    General gene information

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    chromatin binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    histone binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    lysine-acetylated histone binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    modification-dependent protein binding ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    anterior/posterior pattern specification ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    biological_process ND
    No biological Data available
    more info
     
    negative regulation of canonical Wnt signaling pathway ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    positive regulation of Wnt signaling pathway, planar cell polarity pathway ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    positive regulation of transcription, DNA-templated ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    segment specification ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    transcription elongation factor complex ISO
    Inferred from Sequence Orthology
    more info
    PubMed 

    General protein information

    Preferred Names
    protein AF-9
    Names
    myeloid/lymphoid or mixed lineage-leukemia translocation to 3 homolog
    myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila)
    myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
    myeloid/lymphoid or mixed-lineage leukemia,translocated to, 3 (trithorax homolog, Drosophila)
    myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3
    translocated to, 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_053718.2NP_446170.1  protein AF-9

      See identical proteins and their annotated locations for NP_446170.1

      Status: PROVISIONAL

      Source sequence(s)
      AJ006295
      UniProtKB/TrEMBL
      O88760

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005104.4 Reference Rnor_6.0 Primary Assembly

      Range
      106103498..106202559 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000073.1 Alternate Rn_Celera

      Range
      100747987..100840556
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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