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    ATF1 activating transcription factor 1 [ Ovis aries (sheep) ]

    Gene ID: 101117917, updated on 9-Feb-2019

    Summary

    Gene symbol
    ATF1
    Gene description
    activating transcription factor 1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ovis aries
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Cetartiodactyla; Ruminantia; Pecora; Bovidae; Caprinae; Ovis
    Orthologs

    Genomic context

    See ATF1 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    103 current Oar_rambouillet_v1.0 (GCF_002742125.1) 3 NC_040254.1 (145065058..145127314, complement)
    102 previous assembly Oar_v4.0 (GCF_000298735.2) 3 NC_019460.2 (135172255..135233462, complement)

    Chromosome 3 - NC_040254.1Genomic Context describing neighboring genes Neighboring gene methyltransferase-like protein 7A Neighboring gene thymosin beta-10 pseudogene Neighboring gene 40S ribosomal protein S23 Neighboring gene transmembrane serine protease 12 Neighboring gene disco interacting protein 2 homolog B Neighboring gene ATP synthase subunit g, mitochondrial pseudogene Neighboring gene cytochrome c

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sheep Tissue Atlas
    • Description: Sheep total RNA was extracted from embryonic and adult tissues
    • BioProject: PRJEB6169
    • Publication: PMID 24904168
    • Analysis date: Mon Jan 29 09:33:46 2018

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Pathways from BioSystems

    General protein information

    Preferred Names
    cyclic AMP-dependent transcription factor ATF-1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Ovis aries Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Oar_rambouillet_v1.0 Primary Assembly

    Genomic

    1. NC_040254.1 Reference Oar_rambouillet_v1.0 Primary Assembly

      Range
      145065058..145127314 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004006355.3XP_004006404.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

      See identical proteins and their annotated locations for XP_004006404.1

      Conserved Domains (2) summary
      cd14690
      Location:214268
      bZIP_CREB1; Basic leucine zipper (bZIP) domain of Cyclic AMP-responsive element-binding protein 1 (CREB1) and similar proteins: a DNA-binding and dimerization domain
      pfam02173
      Location:4882
      pKID; pKID domain
    2. XM_012174295.3XP_012029685.2  cyclic AMP-dependent transcription factor ATF-1 isoform X1

    3. XM_012174289.2XP_012029679.2  cyclic AMP-dependent transcription factor ATF-1 isoform X2

    4. XM_027967333.1XP_027823134.1  cyclic AMP-dependent transcription factor ATF-1 isoform X3

    RNA

    1. XR_001039126.3 RNA Sequence

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