Format

Send to:

Choose Destination
    • Showing Current items.

    Thbs1 thrombospondin 1 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100727882, updated on 27-Jun-2018

    Summary

    Gene symbol
    Thbs1
    Gene description
    thrombospondin 1
    See related
    Ensembl:ENSCPOG00000014779
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs

    Genomic context

    See Thbs1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176409.1 (25213785..25229849)

    NT_176409.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L21 pseudogene Neighboring gene RAS guanyl releasing protein 1 Neighboring gene uncharacterized LOC106028832 Neighboring gene fibrous sheath interacting protein 1 Neighboring gene fibrous sheath-interacting protein 1

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NT_176409 Unplaced Scaffold Reference Cavpor3.0 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    LOW QUALITY PROTEIN: thrombospondin-1

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Cavia porcellus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cavpor3.0 Primary Assembly

    Genomic

    1. NT_176409.1 Reference Cavpor3.0 Primary Assembly

      Range
      25213785..25229849
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013158839.2XP_013014293.1  LOW QUALITY PROTEIN: thrombospondin-1

      Related
      ENSCPOP00000013317.3, ENSCPOT00000014924.3
      Conserved Domains (10) summary
      smart00209
      Location:439491
      TSP1; Thrombospondin type 1 repeats
      smart00210
      Location:26221
      TSPN; Thrombospondin N-terminal -like domains
      sd00001
      Location:846883
      TSP3; TSP3 repeat_long [structural motif]
      sd00002
      Location:788822
      TSP3; TSP3 repeat_long [structural motif]
      sd00003
      Location:692727
      TSP3_1C; TSP3 repeat_1C [structural motif]
      pfam00090
      Location:384429
      TSP_1; Thrombospondin type 1 domain
      pfam00093
      Location:319373
      VWC; von Willebrand factor type C domain
      pfam02412
      Location:847883
      TSP_3; Thrombospondin type 3 repeat
      pfam05735
      Location:9731170
      TSP_C; Thrombospondin C-terminal region
      pfam12947
      Location:651690
      EGF_3; EGF domain
    Support Center