Format

Send to:

Choose Destination
    • Showing Current items.

    Itgb4 integrin subunit beta 4 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100718717, updated on 27-Jun-2018

    Summary

    Gene symbol
    Itgb4
    Gene description
    integrin subunit beta 4
    See related
    Ensembl:ENSCPOG00000012656
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs

    Genomic context

    See Itgb4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    41
    Annotation release Status Assembly Chr Location
    103 current Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176226.1 (264381..297695)

    NT_176226.1Genomic Context describing neighboring genes Neighboring gene RecQ like helicase 5 Neighboring gene small integral membrane protein 6 Neighboring gene SAP30 binding protein Neighboring gene galactokinase 1 Neighboring gene histone H3.3

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NT_176226 Unplaced Scaffold Reference Cavpor3.0 Primary Assembly

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    General protein information

    Preferred Names
    integrin beta-4
    Names
    integrin beta 4

    NCBI Reference Sequences (RefSeq)

    RefSeqs of Annotated Genomes: Cavia porcellus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cavpor3.0 Primary Assembly

    Genomic

    1. NT_176226.1 Reference Cavpor3.0 Primary Assembly

      Range
      264381..297695
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013151909.2XP_013007363.1  integrin beta-4 isoform X6

      Conserved Domains (6) summary
      smart00237
      Location:9881082
      Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
      cd00063
      Location:12181311
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:16881773
      fn3; Fibronectin type III domain
      pfam00362
      Location:37454
      Integrin_beta; Integrin, beta chain
      pfam07965
      Location:627707
      Integrin_B_tail; Integrin beta tail domain
      pfam07974
      Location:586615
      EGF_2; EGF-like domain
    2. XM_013151939.2XP_013007393.1  integrin beta-4 isoform X7

      Conserved Domains (6) summary
      smart00237
      Location:9881082
      Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
      cd00063
      Location:12181311
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:15691654
      fn3; Fibronectin type III domain
      pfam00362
      Location:37454
      Integrin_beta; Integrin, beta chain
      pfam07965
      Location:627707
      Integrin_B_tail; Integrin beta tail domain
      pfam07974
      Location:586615
      EGF_2; EGF-like domain
    3. XM_003461419.4XP_003461467.1  integrin beta-4 isoform X2

      UniProtKB/TrEMBL
      A0A286XLM1
      Related
      ENSCPOP00000026350.1, ENSCPOT00000046454.1
      Conserved Domains (6) summary
      smart00237
      Location:9881082
      Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
      cd00063
      Location:12181311
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:16351720
      fn3; Fibronectin type III domain
      pfam00362
      Location:37454
      Integrin_beta; Integrin, beta chain
      pfam07965
      Location:627707
      Integrin_B_tail; Integrin beta tail domain
      pfam07974
      Location:586615
      EGF_2; EGF-like domain
    4. XM_013151925.2XP_013007379.1  integrin beta-4 isoform X3

      UniProtKB/TrEMBL
      H0VLX6
      Related
      ENSCPOP00000011385.3, ENSCPOT00000012777.3
      Conserved Domains (6) summary
      smart00237
      Location:9881082
      Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
      cd00063
      Location:12181311
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:16221707
      fn3; Fibronectin type III domain
      pfam00362
      Location:37454
      Integrin_beta; Integrin, beta chain
      pfam07965
      Location:627707
      Integrin_B_tail; Integrin beta tail domain
      pfam07974
      Location:586615
      EGF_2; EGF-like domain
    5. XM_013151911.2XP_013007365.1  integrin beta-4 isoform X1

      Conserved Domains (6) summary
      smart00237
      Location:9871081
      Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
      cd00063
      Location:12171310
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:16871772
      fn3; Fibronectin type III domain
      pfam00362
      Location:37454
      Integrin_beta; Integrin, beta chain
      pfam07965
      Location:627706
      Integrin_B_tail; Integrin beta tail domain
      pfam07974
      Location:586615
      EGF_2; EGF-like domain
    6. XM_013151933.2XP_013007387.1  integrin beta-4 isoform X4

      Conserved Domains (6) summary
      smart00237
      Location:9871081
      Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
      cd00063
      Location:12171310
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:16211706
      fn3; Fibronectin type III domain
      pfam00362
      Location:37454
      Integrin_beta; Integrin, beta chain
      pfam07965
      Location:627706
      Integrin_B_tail; Integrin beta tail domain
      pfam07974
      Location:586615
      EGF_2; EGF-like domain
    7. XM_023564904.1XP_023420672.1  integrin beta-4 isoform X5

      Conserved Domains (6) summary
      smart00237
      Location:9871081
      Calx_beta; Domains in Na-Ca exchangers and integrin-beta4
      cd00063
      Location:14541535
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07974
      Location:586615
      EGF_2; EGF-like domain
      pfam00041
      Location:15681653
      fn3; Fibronectin type III domain
      pfam07965
      Location:627706
      Integrin_B_tail; Integrin beta tail domain
      cl00057
      Location:37454
      vWFA; Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of ...
    Support Center